Developing a Novel Parameter Estimation Method for Agent-Based Model in Immune System Simulation under the Framework of History Matching: A Case Study on Influenza A Virus Infection

• Published in: International journal of molecular sciences Vol. 18; no. 12; p. 2592
• Main Authors: Li, Tingting, Cheng, Zhengguo, Zhang, Le
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 01.12.2017; MDPI
• Subjects: Agent-based models; Computer applications; Computer simulation; Computing time; generalized additive model; history matching; Immune system; Influenza A; Mathematical models; Parameter estimation; particle swarm optimization algorithm; Simulation; Statistical analysis; particle swarm optimization algorithm; agent-based models; generalized additive model; history matching
• ISSN: 1422-0067; 1661-6596; 1422-0067
• DOI: 10.3390/ijms18122592

Since they can provide a natural and flexible description of nonlinear dynamic behavior of complex system, Agent-based models (ABM) have been commonly used for immune system simulation. However, it is crucial for ABM to obtain an appropriate estimation for the key parameters of the model by incorporating experimental data. In this paper, a systematic procedure for immune system simulation by integrating the ABM and regression method under the framework of history matching is developed. A novel parameter estimation method by incorporating the experiment data for the simulator ABM during the procedure is proposed. First, we employ ABM as simulator to simulate the immune system. Then, the dimension-reduced type generalized additive model (GAM) is employed to train a statistical regression model by using the input and output data of ABM and play a role as an emulator during history matching. Next, we reduce the input space of parameters by introducing an implausible measure to discard the implausible input values. At last, the estimation of model parameters is obtained using the particle swarm optimization algorithm (PSO) by fitting the experiment data among the non-implausible input values. The real Influeza A Virus (IAV) data set is employed to demonstrate the performance of our proposed method, and the results show that the proposed method not only has good fitting and predicting accuracy, but it also owns favorable computational efficiency.