Genome-Wide DNA Methylation in Policemen Working in Cities Differing by Major Sources of Air Pollution

• Published in: International journal of molecular sciences Vol. 23; no. 3; p. 1666
• Main Authors: Honkova, Katerina, Rossnerova, Andrea, Chvojkova, Irena, Milcova, Alena, Margaryan, Hasmik, Pastorkova, Anna, Ambroz, Antonin, Rossner, Jr, Pavel, Jirik, Vitezslav, Rubes, Jiri, Sram, Radim J, Topinka, Jan
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 31.01.2022; MDPI
• Subjects: Adult; Air monitoring; Air Pollutants - adverse effects; Air pollution; Air Pollution - adverse effects; Asthma; Axon guidance; Biological activity; Biomarkers; Cell junctions; Cities; CpG islands; Czech Republic; Deoxyribonucleic acid; Deregulation; Diabetes mellitus; DNA; DNA methylation; DNA Methylation - drug effects; DNA microarrays; DNA repair; Dopamine receptors; environment; Environmental Exposure - adverse effects; Epigenetics; Female; Gene expression; Genome-Wide Association Study; Genomes; Humans; KCNQ1 protein; Loci; Lung cancer; Male; Middle Aged; molecular epidemiology; Nitrogen dioxide; Police; Pollutants; Pollution monitoring; Pollution sources; Potassium channels (voltage-gated); Questionnaires; Respiratory diseases; Seasons; Summer; Winter; Czech Republic; molecular epidemiology; DNA methylation; environment; air pollution; epigenetics
• ISSN: 1422-0067; 1661-6596; 1422-0067
• DOI: 10.3390/ijms23031666

DNA methylation is the most studied epigenetic mechanism that regulates gene expression, and it can serve as a useful biomarker of prior environmental exposure and future health outcomes. This study focused on DNA methylation profiles in a human cohort, comprising 125 nonsmoking city policemen (sampled twice), living and working in three localities (Prague, Ostrava and Ceske Budejovice) of the Czech Republic, who spent the majority of their working time outdoors. The main characterization of the localities, differing by major sources of air pollution, was defined by the stationary air pollution monitoring of PM2.5, B[a]P and NO . DNA methylation was analyzed by a genome-wide microarray method. No season-specific DNA methylation pattern was discovered; however, we identified 13,643 differentially methylated CpG loci (DML) for a comparison between the Prague and Ostrava groups. The most significant DML was cg10123377 (log FC = -1.92, = 8.30 × 10 ) and loci annotated to (total 20 CpG loci). We also found two hypomethylated loci annotated to the DNA repair gene Groups of DML annotated to the same gene were linked to diabetes mellitus ( ), respiratory diseases ( ), the dopaminergic system of the brain and neurodegenerative diseases ( ). The most significant possibly affected pathway was Axon guidance, with 86 potentially deregulated genes near DML. The cluster of gene sets that could be affected by DNA methylation in the Ostrava groups mainly includes the neuronal functions and biological processes of cell junctions and adhesion assembly. The study demonstrates that the differences in the type of air pollution between localities can affect a unique change in DNA methylation profiles across the human genome.