Comparative Transcriptomic and Proteomic Analysis to Deeply Investigate the Role of Hydrogen Cyanamide in Grape Bud Dormancy

• Published in: International journal of molecular sciences Vol. 20; no. 14; p. 3528
• Main Authors: Khalil-Ur-Rehman, Muhammad, Wang, Wu, Dong, Yang, Faheem, Muhammad, Xu, Yanshuai, Gao, Zhihong, Guo Shen, Zhen, Tao, Jianmin
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 18.07.2019; MDPI
• Subjects: Biosynthesis; Calcium ions; Calcium signalling; DEGs; Dormancy; Environmental conditions; Flowers - genetics; Flowers - metabolism; Fruits; Gene expression; Gene Expression Regulation, Plant - genetics; Gene Expression Regulation, Plant - physiology; grape; Grapes; Hydrogen; hydrogen cyanamide; Hydrogen peroxide; Hypoxia; Investigations; Metabolism; Phosphorylation; Physiology; Plant Dormancy - genetics; Plant Dormancy - physiology; Plant Proteins - genetics; Plant Proteins - metabolism; Proteins; proteomic; Proteomics; Proteomics - methods; Regulators; Transcription; Transcriptome - genetics; transcriptomic; Trends; Vigor; Viticulture; Vitis - genetics; Vitis - metabolism; Wine; Winter; China; proteomic; DEGs; hydrogen cyanamide; grape; transcriptomic; dormancy
• ISSN: 1422-0067; 1661-6596; 1422-0067
• DOI: 10.3390/ijms20143528

Hydrogen cyanamide (HC) is an agrochemical compound that is frequently used to break bud dormancy in grapevines grown under mild winter conditions globally. The present study was carried out to provide an in-depth understanding of the molecular mechanism associated with HC releasing bud dormancy in grapevines. For this purpose, RNA-seq based transcriptomic and tandem mass tag (TMT)-based proteomic information was acquired and critically analyzed. The combined results of transcriptomic and proteomic analysis were utilized to demonstrate differential expression pattern of genes at the translational and transcriptional levels. The outcome of the proteomic analysis revealed that a total of 7135 proteins ( -value ≤ 0.05; fold change ≥ 1.5) between the treatments (HC treated versus control) were identified, out of which 6224 were quantified. Among these differentially expressed proteins (DEPs), the majority of these proteins were related to heat shock, oxidoreductase activity, and energy metabolism. Metabolic, ribosomal, and hormonal signaling pathways were found to be significantly enriched at both the transcriptional and translational levels. It was illustrated that genes associated with metabolic and oxidoreductase activity were mainly involved in the regulation of bud dormancy at the transcriptomic and proteomic levels. The current work furnishes a new track to decipher the molecular mechanism of bud dormancy after HC treatment in grapes. Functional characterization of key genes and proteins will be informative in exactly pinpointing the crosstalk between transcription and translation in the release of bud dormancy after HC application.