Engineered microbial host selection for value-added bioproducts from lignocellulose

Lignocellulose is a rich and sustainable globally available carbon source and is considered a prominent alternative raw material for producing biofuels and valuable chemical compounds. Enzymatic hydrolysis is one of the crucial steps of lignocellulose degradation. Cellulolytic and hemicellulolytic e...

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Published inBiotechnology advances Vol. 37; no. 6; p. 107347
Main Authors de Paula, Renato Graciano, Antoniêto, Amanda Cristina Campos, Ribeiro, Liliane Fraga Costa, Srivastava, Neha, O'Donovan, Anthonia, Mishra, P.K., Gupta, Vijai K., Silva, Roberto N.
Format Journal Article
LanguageEnglish
Published England Elsevier Inc 01.11.2019
Subjects
Biofuels
Biomass
Hydrolysis
Lignin
Lignocellulosic biomass
Metabolic engineering
Protein engineering
Transcriptional factors
Value-added bioproducts
Glf
TracrRNA
Transcriptional factors
AraD
ptsG
AraB
AraA
galP
EpPCR
SREBPs
MDR
RBP
EG
glk
XBP
als
Metabolic engineering
Cas9
Tkt
NADPH
BG
ABF
CBH
2,3-BDO
StEP
CBM
CBP
pforA
NADH
CAZYmes
GBP
HDR
LPMOs
Xyl A
Xyl B
XDH
HMF
Protein engineering
CRISPR
ldhA
XYG
aldC
bdh
Lignocellulosic biomass
AXE
CCR
XK
Value-added bioproducts
pflB
XR
NHEJ
PAM
Tal
Online AccessGet full text

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Abstract Lignocellulose is a rich and sustainable globally available carbon source and is considered a prominent alternative raw material for producing biofuels and valuable chemical compounds. Enzymatic hydrolysis is one of the crucial steps of lignocellulose degradation. Cellulolytic and hemicellulolytic enzyme mixes produced by different microorganisms including filamentous fungi, yeasts and bacteria, are used to degrade the biomass to liberate monosaccharides and other compounds for fermentation or conversion to value-added products. During biomass pretreatment and degradation, toxic compounds are produced, and undesirable carbon catabolic repression (CCR) can occur. In order to solve this problem, microbial metabolic pathways and transcription factors involved have been investigated along with the application of protein engineering to optimize the biorefinery platform. Engineered Microorganisms have been used to produce specific enzymes to breakdown biomass polymers and metabolize sugars to produce ethanol as well other biochemical compounds. Protein engineering strategies have been used for modifying lignocellulolytic enzymes to overcome enzymatic limitations and improving both their production and functionality. Furthermore, promoters and transcription factors, which are key proteins in this process, are modified to promote microbial gene expression that allows a maximum performance of the hydrolytic enzymes for lignocellulosic degradation. The present review will present a critical discussion and highlight the aspects of the use of microorganisms to convert lignocellulose into value-added bioproduct as well combat the bottlenecks to make the biorefinery platform from lignocellulose attractive to the market.
AbstractList Lignocellulose is a rich and sustainable globally available carbon source and is considered a prominent alternative raw material for producing biofuels and valuable chemical compounds. Enzymatic hydrolysis is one of the crucial steps of lignocellulose degradation. Cellulolytic and hemicellulolytic enzyme mixes produced by different microorganisms including filamentous fungi, yeasts and bacteria, are used to degrade the biomass to liberate monosaccharides and other compounds for fermentation or conversion to value-added products. During biomass pretreatment and degradation, toxic compounds are produced, and undesirable carbon catabolic repression (CCR) can occur. In order to solve this problem, microbial metabolic pathways and transcription factors involved have been investigated along with the application of protein engineering to optimize the biorefinery platform. Engineered Microorganisms have been used to produce specific enzymes to breakdown biomass polymers and metabolize sugars to produce ethanol as well other biochemical compounds. Protein engineering strategies have been used for modifying lignocellulolytic enzymes to overcome enzymatic limitations and improving both their production and functionality. Furthermore, promoters and transcription factors, which are key proteins in this process, are modified to promote microbial gene expression that allows a maximum performance of the hydrolytic enzymes for lignocellulosic degradation. The present review will present a critical discussion and highlight the aspects of the use of microorganisms to convert lignocellulose into value-added bioproduct as well combat the bottlenecks to make the biorefinery platform from lignocellulose attractive to the market.
ArticleNumber 107347
Author Mishra, P.K.
Antoniêto, Amanda Cristina Campos
O'Donovan, Anthonia
Silva, Roberto N.
Srivastava, Neha
Ribeiro, Liliane Fraga Costa
de Paula, Renato Graciano
Gupta, Vijai K.
Author_xml – sequence: 1
  givenname: Renato Graciano
  surname: de Paula
  fullname: de Paula, Renato Graciano
  organization: Department of Biochemistry and Immunology, Ribeirao Preto Medical School, University of São Paulo, Ribeirão Preto, SP, Brazil
– sequence: 2
  givenname: Amanda Cristina Campos
  surname: Antoniêto
  fullname: Antoniêto, Amanda Cristina Campos
  organization: Department of Biochemistry and Immunology, Ribeirao Preto Medical School, University of São Paulo, Ribeirão Preto, SP, Brazil
– sequence: 3
  givenname: Liliane Fraga Costa
  surname: Ribeiro
  fullname: Ribeiro, Liliane Fraga Costa
  organization: Department of Biochemistry and Immunology, Ribeirao Preto Medical School, University of São Paulo, Ribeirão Preto, SP, Brazil
– sequence: 4
  givenname: Neha
  orcidid: 0000-0002-8760-0695
  surname: Srivastava
  fullname: Srivastava, Neha
  organization: Department of Chemical Engineering & Technology, IIT (BHU), Varanasi 221005, U.P, India
– sequence: 5
  givenname: Anthonia
  surname: O'Donovan
  fullname: O'Donovan, Anthonia
  organization: School of Science and Computing, Galway-Mayo Institute of Technology, Galway, Ireland
– sequence: 6
  givenname: P.K.
  surname: Mishra
  fullname: Mishra, P.K.
  organization: Department of Chemical Engineering & Technology, IIT (BHU), Varanasi 221005, U.P, India
– sequence: 7
  givenname: Vijai K.
  orcidid: 0000-0003-1565-5918
  surname: Gupta
  fullname: Gupta, Vijai K.
  email: vijaifzd@gmail.com
  organization: ERA Chair of Green Chemistry, Department of Chemistry and Biotechnology, Tallinn University of Technology, 12618 Tallinn, Estonia
– sequence: 8
  givenname: Roberto N.
  orcidid: 0000-0002-8992-7130
  surname: Silva
  fullname: Silva, Roberto N.
  email: rsilva@fmrp.usp.br
  organization: Department of Biochemistry and Immunology, Ribeirao Preto Medical School, University of São Paulo, Ribeirão Preto, SP, Brazil
BackLink https://www.ncbi.nlm.nih.gov/pubmed/30771467$$D View this record in MEDLINE/PubMed
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EP2
EP3
F5P
FDB
FIRID
FNPLU
FYGXN
G-Q
GBLVA
IHE
J1W
KOM
LUGTX
LX3
M41
MO0
N9A
O-L
O9-
OAUVE
OZT
P-8
P-9
P2P
PC.
Q38
RNS
ROL
RPZ
SDF
SDG
SDP
SES
SPC
SPCBC
SSG
SSI
SSU
SSZ
T5K
~G-
~KM
AAHBH
AAXKI
AKRWK
CGR
CUY
CVF
ECM
EIF
NPM
53G
AAQXK
AAYXX
ABXDB
ADMUD
AFFNX
AFJKZ
AGRDE
ASPBG
AVWKF
AZFZN
CITATION
FEDTE
FGOYB
G-2
G8K
HLW
HMG
HVGLF
HZ~
MVM
R2-
RIG
SBG
SEW
SIN
WUQ
XPP
Y6R
ID FETCH-LOGICAL-c477t-11e9f30ae67c2b6c20ca785aaeca19f852ebaca2a71f9d30641a47ca95932123
IEDL.DBID .~1
ISSN 0734-9750
IngestDate Thu Sep 26 16:16:43 EDT 2024
Sat Sep 28 08:30:31 EDT 2024
Fri Feb 23 02:25:04 EST 2024
IsPeerReviewed true
IsScholarly true
Issue 6
Keywords Glf
TracrRNA
Transcriptional factors
AraD
ptsG
AraB
AraA
galP
EpPCR
SREBPs
MDR
RBP
EG
glk
XBP
als
Metabolic engineering
Cas9
Tkt
NADPH
BG
ABF
CBH
2,3-BDO
StEP
CBM
CBP
pforA
NADH
CAZYmes
GBP
HDR
LPMOs
Xyl A
Xyl B
XDH
HMF
Protein engineering
CRISPR
ldhA
XYG
aldC
bdh
Lignocellulosic biomass
AXE
CCR
XK
Value-added bioproducts
pflB
XR
NHEJ
PAM
Tal
Language English
License Copyright © 2019 Elsevier Inc. All rights reserved.
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c477t-11e9f30ae67c2b6c20ca785aaeca19f852ebaca2a71f9d30641a47ca95932123
ORCID 0000-0003-1565-5918
0000-0002-8992-7130
0000-0002-8760-0695
PMID 30771467
ParticipantIDs crossref_primary_10_1016_j_biotechadv_2019_02_003
pubmed_primary_30771467
elsevier_sciencedirect_doi_10_1016_j_biotechadv_2019_02_003
PublicationCentury 2000
PublicationDate 2019-11-01
PublicationDateYYYYMMDD 2019-11-01
PublicationDate_xml – month: 11
  year: 2019
  text: 2019-11-01
  day: 01
PublicationDecade 2010
PublicationPlace England
PublicationPlace_xml – name: England
PublicationTitle Biotechnology advances
PublicationTitleAlternate Biotechnol Adv
PublicationYear 2019
Publisher Elsevier Inc
Publisher_xml – name: Elsevier Inc
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Snippet Lignocellulose is a rich and sustainable globally available carbon source and is considered a prominent alternative raw material for producing biofuels and...
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SubjectTerms Biofuels
Biomass
Hydrolysis
Lignin
Lignocellulosic biomass
Metabolic engineering
Protein engineering
Transcriptional factors
Value-added bioproducts
Title Engineered microbial host selection for value-added bioproducts from lignocellulose
URI https://dx.doi.org/10.1016/j.biotechadv.2019.02.003
https://www.ncbi.nlm.nih.gov/pubmed/30771467
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