Identification of overlay differentially expressed genes in both rats and goats with blast lung injury through comparative transcriptomics

• Published in: Chinese journal of traumatology Vol. 27; no. 1; pp. 34 - 41
• Main Authors: Wang, Hong, Gao, Jun-Hong, Fan, Xiao-Lin, Lu, Qing, Li, Liang, Ma, Ning, Wang, Qi, Zhang, Yu-Hao
• Format: Journal Article
• Language: English
• Published: China Elsevier B.V 01.01.2024; Elsevier
• Subjects: Animals; Blast lung injury; Differentially expressed genes; Gene Expression; Gene Expression Profiling; Goats - genetics; Keratin-4; Lung Injury - genetics; Original; Rats; Target genes; Transcriptomic; Target genes; Differentially expressed genes; Blast lung injury; Transcriptomic
• ISSN: 1008-1275; 1008-1275
• DOI: 10.1016/j.cjtee.2023.11.005

To identify the potential target genes of blast lung injury (BLI) for the diagnosis and treatment. This is an experimental study. The BLI models in rats and goats were established by conducting a fuel-air explosive power test in an unobstructed environment, which was subsequently validated through hematoxylin-eosin staining. Transcriptome sequencing was performed on lung tissues from both goats and rats. Differentially expressed genes were identified using the criteria of q ≤ 0.05 and |log2 fold change| ≥ 1. Following that, enrichment analyses were conducted for gene ontology and the Kyoto Encyclopedia of Genes and Genomes pathways. The potential target genes were further confirmed through quantitative real-time polymerase chain reaction and enzyme linked immunosorbent assay. Observations through microscopy unveiled the presence of reddish edema fluid, erythrocytes, and instances of focal or patchy bleeding within the alveolar cavity. Transcriptome sequencing analysis identified a total of 83 differentially expressed genes in both rats and goats. Notably, 49 genes exhibited a consistent expression pattern, with 38 genes displaying up-regulation and 11 genes demonstrating down-regulation. Enrichment analysis highlighted the potential involvement of the interleukin-17 signaling pathway and vascular smooth muscle contraction pathway in the underlying mechanism of BLI. Furthermore, the experimental findings in both goats and rats demonstrated a strong association between BLI and several key genes, including anterior gradient 2, ankyrin repeat domain 65, bactericidal/permeability-increasing fold containing family A member 1, bactericidal/permeability-increasing fold containing family B member 1, and keratin 4, which exhibited up-regulation. Anterior gradient 2, ankyrin repeat domain 65, bactericidal/permeability-increasing fold containing family A member 1, bactericidal/permeability-increasing fold containing family B member 1, and keratin 4 hold potential as target genes for the prognosis, diagnosis, and treatment of BLI.