Homorepeat variability within the human population

• Published in: NAR genomics and bioinformatics Vol. 6; no. 2; p. lqae053
• Main Authors: Mier, Pablo, Andrade-Navarro, Miguel A, Morett, Enrique
• Format: Journal Article
• Language: English
• Published: England Oxford University Press 01.06.2024
• Subjects: Amino acid sequence; Application Notes; DNA biosynthesis; DNA-directed DNA polymerase; Genetic diversity; Genetic variability; Nucleotide sequence; Polyglutamine; Population genetics; Population studies
• ISSN: 2631-9268; 2631-9268
• DOI: 10.1093/nargab/lqae053

Genetic variation within populations plays a crucial role in driving evolution. Unlike the average protein sequence, the evolution of homorepeats can be influenced by DNA replication slippage, when DNA polymerases either add or skip repeats of nucleotides. While there are some diseases known to be caused by abnormal changes in the length of amino acid homorepeats, naturally occurring variations in homorepeat length remain relatively unexplored. In our study, we examined the variation in amino acid homorepeat length of human individuals by analyzing 125 748 exomes, as well as 15 708 whole genomes. Our analyses revealed significant variability in homorepeat length across the human population, indicating that these motifs are prone to mutations at higher rates than non repeat sequences. We focused our study on glutamine homorepeats, also known as polyQ sequences, and found that shorter polyQ sequences tend to exhibit greater length variation, while longer ones primarily undergo deletions. Notably, polyQ sequencesthat are more conserved across primates tend to show less variation within the human population, indicating stronger selective pressure to maintain their length. Overall, our results demonstrate that there is large natural variation in the length of homorepeats within the human population, with no apparent impact on observable traits.