Genome sequence of the potential probiotic eukaryote Saccharomyces cerevisiae KCCM 51299
Saccharomyces cerevisiae KCCM 51299, a potential probiotic yeast overproducing glutathione, has been isolated from among 272 yeast strains from the relatively safe Nuruk. The genome sequence of S. cerevisiae KCCM 51299 was analyzed and a near-complete genome (12 Mb) with 19 contigs was assembled aft...
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Published in | 3 Biotech Vol. 10; no. 4; p. 185 |
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Main Authors | , , , , , , |
Format | Journal Article |
Language | English |
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01.04.2020
Springer Nature B.V |
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Abstract | Saccharomyces cerevisiae
KCCM 51299, a potential probiotic yeast overproducing glutathione, has been isolated from among 272 yeast strains from the relatively safe Nuruk. The genome sequence of
S. cerevisiae
KCCM 51299 was analyzed and a near-complete genome (12 Mb) with 19 contigs was assembled after PacBio single-molecule real-time (SMRT) sequencing. The genome of
S. cerevisiae
KCCM 51299 was compared to the
S. cerevisiae
s288c reference genome. Additionally, genes involved in glutathione biosynthesis were identified, and the glutathione biosynthesis pathway was constructed in silico based on these genes. Furthermore,
S. cerevisiae
KCCM 51299 genes were compared with those in other yeast genomes. Finally, genome-scale in silico flux analysis was carried out, and a metabolic engineering strategy for glutathione biosynthesis was generated. These results provide useful information to further develop eukaryotic probiotics to overproduce glutathione. |
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AbstractList | Saccharomyces cerevisiae KCCM 51299, a potential probiotic yeast overproducing glutathione, has been isolated from among 272 yeast strains from the relatively safe Nuruk. The genome sequence of S. cerevisiae KCCM 51299 was analyzed and a near-complete genome (12 Mb) with 19 contigs was assembled after PacBio single-molecule real-time (SMRT) sequencing. The genome of S. cerevisiae KCCM 51299 was compared to the S. cerevisiae s288c reference genome. Additionally, genes involved in glutathione biosynthesis were identified, and the glutathione biosynthesis pathway was constructed in silico based on these genes. Furthermore, S. cerevisiae KCCM 51299 genes were compared with those in other yeast genomes. Finally, genome-scale in silico flux analysis was carried out, and a metabolic engineering strategy for glutathione biosynthesis was generated. These results provide useful information to further develop eukaryotic probiotics to overproduce glutathione. Saccharomyces cerevisiae KCCM 51299, a potential probiotic yeast overproducing glutathione, has been isolated from among 272 yeast strains from the relatively safe Nuruk. The genome sequence of S. cerevisiae KCCM 51299 was analyzed and a near-complete genome (12 Mb) with 19 contigs was assembled after PacBio single-molecule real-time (SMRT) sequencing. The genome of S. cerevisiae KCCM 51299 was compared to the S. cerevisiae s288c reference genome. Additionally, genes involved in glutathione biosynthesis were identified, and the glutathione biosynthesis pathway was constructed in silico based on these genes. Furthermore, S. cerevisiae KCCM 51299 genes were compared with those in other yeast genomes. Finally, genome-scale in silico flux analysis was carried out, and a metabolic engineering strategy for glutathione biosynthesis was generated. These results provide useful information to further develop eukaryotic probiotics to overproduce glutathione. KCCM 51299, a potential probiotic yeast overproducing glutathione, has been isolated from among 272 yeast strains from the relatively safe Nuruk. The genome sequence of KCCM 51299 was analyzed and a near-complete genome (12 Mb) with 19 contigs was assembled after PacBio single-molecule real-time (SMRT) sequencing. The genome of KCCM 51299 was compared to the s288c reference genome. Additionally, genes involved in glutathione biosynthesis were identified, and the glutathione biosynthesis pathway was constructed in silico based on these genes. Furthermore, KCCM 51299 genes were compared with those in other yeast genomes. Finally, genome-scale in silico flux analysis was carried out, and a metabolic engineering strategy for glutathione biosynthesis was generated. These results provide useful information to further develop eukaryotic probiotics to overproduce glutathione. |
ArticleNumber | 185 |
Author | Hwang, Junsang Kim, Tae-Wan Bang, Ina Chin, Young-Wook Shin, Seung Chul Kim, Hyo Jin Kim, Donghyuk |
Author_xml | – sequence: 1 givenname: Junsang surname: Hwang fullname: Hwang, Junsang organization: Graduate School of International Agricultural Technology, Seoul National University, Institutes of Green Bio Science and Technology, Seoul National University – sequence: 2 givenname: Ina surname: Bang fullname: Bang, Ina organization: School of Energy and Chemical Engineering, Ulsan National Institute of Science and Technology – sequence: 3 givenname: Donghyuk surname: Kim fullname: Kim, Donghyuk organization: School of Energy and Chemical Engineering, Ulsan National Institute of Science and Technology – sequence: 4 givenname: Seung Chul surname: Shin fullname: Shin, Seung Chul organization: Division of Polar Life Sciences, Korea Polar Research Institute – sequence: 5 givenname: Young-Wook surname: Chin fullname: Chin, Young-Wook organization: Research Group of Traditional Food, Research Division of Strategic Food Technology, Korea Food Research Institute – sequence: 6 givenname: Tae-Wan surname: Kim fullname: Kim, Tae-Wan organization: Research Group of Traditional Food, Research Division of Strategic Food Technology, Korea Food Research Institute – sequence: 7 givenname: Hyo Jin orcidid: 0000-0002-5757-8773 surname: Kim fullname: Kim, Hyo Jin email: erythritol@snu.ac.kr organization: Graduate School of International Agricultural Technology, Seoul National University, Institutes of Green Bio Science and Technology, Seoul National University, School of Energy and Chemical Engineering, Ulsan National Institute of Science and Technology |
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Cites_doi | 10.1126/science.1241214 10.3748/wjg.v23.i15.2696 10.1186/1471-2105-1-1 10.1016/j.anaerobe.2012.08.004 10.1177/0394632017697987 10.1111/j.1567-1364.2011.00769.x 10.1186/1471-2105-12-491 10.1093/oxfordjournals.molbev.a026149 10.1016/j.biotechadv.2013.03.010 10.1038/nbt.1614 10.1371/journal.pcbi.1004321 10.1016/j.fm.2011.09.008 10.1101/gr.215087.116 10.3748/wjg.v16.i18.2202 10.1186/1475-2859-7-25 10.1186/1752-0509-7-74 10.1126/science.277.5330.1259 10.1126/science.1180823 10.1111/j.1365-2036.2007.03442.x 10.1073/pnas.240345197 10.1007/s00253-015-6776-x 10.1126/science.274.5287.546 10.1534/genetics.114.163188 10.1126/science.aaf4557 10.1038/nmeth.2474 10.1038/nrgastro.2014.66 10.1002/jib.264 10.1126/science.1091317 10.1093/nar/gky069 10.1093/nar/gkv1049 10.1111/jam.12772 10.1186/s12934-015-0281-x 10.1007/s13205-014-0246-5 10.3390/nu8070415 10.1093/nar/gku1203 10.1093/femsyr/fov107 |
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Keywords | KCCM 51299 Near-complete genome sequence Eukaryotic probiotics Glutathione Saccharomyces cerevisiae KCCM 51299 |
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KCCM 51299, a potential probiotic yeast overproducing glutathione, has been isolated from among 272 yeast strains from the relatively... KCCM 51299, a potential probiotic yeast overproducing glutathione, has been isolated from among 272 yeast strains from the relatively safe Nuruk. The genome... Saccharomyces cerevisiae KCCM 51299, a potential probiotic yeast overproducing glutathione, has been isolated from among 272 yeast strains from the relatively... |
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SubjectTerms | Agriculture Bioinformatics Biomaterials Biosynthesis Biotechnology Cancer Research Chemistry Chemistry and Materials Science DNA sequencing Genes Genomes Glutathione Metabolic engineering Nucleotide sequence Original Original Article Probiotics Saccharomyces cerevisiae Stem Cells Yeast |
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Title | Genome sequence of the potential probiotic eukaryote Saccharomyces cerevisiae KCCM 51299 |
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