Genomic characterization of grapevine virus J, a novel virus identified in grapevine

This paper describes the nucleotide sequence and genome organization of a novel RNA virus detected in grapevine ( Vitis vinifera ) cultivar ‘Kizil Sapak’ by high-throughput sequencing (HTS) and tentatively named “grapevine virus J” (GVJ). The full genome of GVJ is 7,390 nucleotides in length, which...

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Bibliographic Details
Published inArchives of virology Vol. 163; no. 7; pp. 1965 - 1967
Main Authors Diaz-Lara, Alfredo, Golino, Deborah, Al Rwahnih, Maher
Format Journal Article
LanguageEnglish
Published Vienna Springer Vienna 01.07.2018
Springer Nature B.V
Subjects
Annotated Sequence Record
Biomedical and Life Sciences
Biomedicine
Genomes
Homology
Infectious Diseases
Medical Microbiology
Movement protein
Next-generation sequencing
Nucleotide sequence
Open reading frames
Phylogeny
Replicase
RNA viruses
Virology
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Summary:This paper describes the nucleotide sequence and genome organization of a novel RNA virus detected in grapevine ( Vitis vinifera ) cultivar ‘Kizil Sapak’ by high-throughput sequencing (HTS) and tentatively named “grapevine virus J” (GVJ). The full genome of GVJ is 7,390 nucleotides in length, which comprises five open reading frames (ORFs), including a 20K ORF (ORF 2) between the replicase (ORF 1) and the movement protein (ORF 3) genes. According to the level of sequence homology and phylogenetics, GVJ is proposed as a new member of the genus Vitivirus (subfamily Trivirinae ; family Betaflexiviridae ), with the closest characterized virus being grapevine virus D (GVD).
Bibliography:ObjectType-Article-1
SourceType-Scholarly Journals-1
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Handling Editor: Ioannis E. Tzanetakis.
ISSN:0304-8608
1432-8798
DOI:10.1007/s00705-018-3793-y