Genomic characterization of grapevine virus J, a novel virus identified in grapevine

This paper describes the nucleotide sequence and genome organization of a novel RNA virus detected in grapevine ( Vitis vinifera ) cultivar ‘Kizil Sapak’ by high-throughput sequencing (HTS) and tentatively named “grapevine virus J” (GVJ). The full genome of GVJ is 7,390 nucleotides in length, which...

Full description

Saved in:
Bibliographic Details
Published inArchives of virology Vol. 163; no. 7; pp. 1965 - 1967
Main Authors Diaz-Lara, Alfredo, Golino, Deborah, Al Rwahnih, Maher
Format Journal Article
LanguageEnglish
Published Vienna Springer Vienna 01.07.2018
Springer Nature B.V
Subjects
Online AccessGet full text

Cover

Loading…
More Information
Summary:This paper describes the nucleotide sequence and genome organization of a novel RNA virus detected in grapevine ( Vitis vinifera ) cultivar ‘Kizil Sapak’ by high-throughput sequencing (HTS) and tentatively named “grapevine virus J” (GVJ). The full genome of GVJ is 7,390 nucleotides in length, which comprises five open reading frames (ORFs), including a 20K ORF (ORF 2) between the replicase (ORF 1) and the movement protein (ORF 3) genes. According to the level of sequence homology and phylogenetics, GVJ is proposed as a new member of the genus Vitivirus (subfamily Trivirinae ; family Betaflexiviridae ), with the closest characterized virus being grapevine virus D (GVD).
Bibliography:ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
Handling Editor: Ioannis E. Tzanetakis.
ISSN:0304-8608
1432-8798
DOI:10.1007/s00705-018-3793-y