Draft genome sequence of Streptomyces sp. strain F1, a potential source for glycoside hydrolases isolated from Brazilian soil
Here, we show the draft genome sequence of Streptomyces sp. F1, a strain isolated from soil with great potential for secretion of hydrolytic enzymes used to deconstruct cellulosic biomass. The draft genome assembly of Streptomyces sp. strain F1 has 69 contigs with a total genome size of 8,142,296bp...
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| Published in | Brazilian journal of microbiology Vol. 48; no. 4; pp. 612 - 614 |
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| Main Authors | , , , , , |
| Format | Journal Article |
| Language | English |
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Brazil
Elsevier Editora Ltda
01.10.2017
Springer Nature B.V Elsevier Sociedade Brasileira de Microbiologia |
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| Abstract | Here, we show the draft genome sequence of Streptomyces sp. F1, a strain isolated from soil with great potential for secretion of hydrolytic enzymes used to deconstruct cellulosic biomass. The draft genome assembly of Streptomyces sp. strain F1 has 69 contigs with a total genome size of 8,142,296bp and G+C 72.65%. Preliminary genome analysis identified 175 proteins as Carbohydrate-Active Enzymes, being 85 glycoside hydrolases organized in 33 distinct families. This draft genome information provides new insights on the key genes encoding hydrolytic enzymes involved in biomass deconstruction employed by soil bacteria. |
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| AbstractList | Here, we show the draft genome sequence of Streptomyces sp. F1, a strain isolated from soil with great potential for secretion of hydrolytic enzymes used to deconstruct cellulosic biomass. The draft genome assembly of Streptomyces sp. strain F1 has 69 contigs with a total genome size of 8,142,296 bp and G + C 72.65%. Preliminary genome analysis identified 175 proteins as Carbohydrate-Active Enzymes, being 85 glycoside hydrolases organized in 33 distinct families. This draft genome information provides new insights on the key genes encoding hydrolytic enzymes involved in biomass deconstruction employed by soil bacteria. Here, we show the draft genome sequence of Streptomyces sp. F1, a strain isolated from soil with great potential for secretion of hydrolytic enzymes used to deconstruct cellulosic biomass. The draft genome assembly of Streptomyces sp. strain F1 has 69 contigs with a total genome size of 8,142,296bp and G+C 72.65%. Preliminary genome analysis identified 175 proteins as Carbohydrate-Active Enzymes, being 85 glycoside hydrolases organized in 33 distinct families. This draft genome information provides new insights on the key genes encoding hydrolytic enzymes involved in biomass deconstruction employed by soil bacteria. ABSTRACT Here, we show the draft genome sequence of Streptomyces sp. F1, a strain isolated from soil with great potential for secretion of hydrolytic enzymes used to deconstruct cellulosic biomass. The draft genome assembly of Streptomyces sp. strain F1 has 69 contigs with a total genome size of 8,142,296 bp and G + C 72.65%. Preliminary genome analysis identified 175 proteins as Carbohydrate-Active Enzymes, being 85 glycoside hydrolases organized in 33 distinct families. This draft genome information provides new insights on the key genes encoding hydrolytic enzymes involved in biomass deconstruction employed by soil bacteria. Here, we show the draft genome sequence of Streptomyces sp. F1, a strain isolated from soil with great potential for secretion of hydrolytic enzymes used to deconstruct cellulosic biomass. The draft genome assembly of Streptomyces sp. strain F1 has 69 contigs with a total genome size of 8,142,296 bp and G + C 72.65%. Preliminary genome analysis identified 175 proteins as Carbohydrate-Active Enzymes, being 85 glycoside hydrolases organized in 33 distinct families. This draft genome information provides new insights on the key genes encoding hydrolytic enzymes involved in biomass deconstruction employed by soil bacteria. |
| Author | Persinoti, Gabriela Felix Paixão, Douglas Antonio Alvaredo Ruller, Roberto Sato, Helia Harumi Melo, Ricardo Rodrigues de Squina, Fábio Márcio |
| AuthorAffiliation | b Universidade Estadual de Campinas (UNICAMP), Faculdade de Engenharia de Alimentos, Departamento de Ciência de Alimentos, Campinas, São Paulo, Brazil a Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Laboratório Nacional de Ciência e Tecnologia do Bioetanol (CTBE), Campinas, São Paulo, Brazil |
| AuthorAffiliation_xml | – name: b Universidade Estadual de Campinas (UNICAMP), Faculdade de Engenharia de Alimentos, Departamento de Ciência de Alimentos, Campinas, São Paulo, Brazil – name: a Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Laboratório Nacional de Ciência e Tecnologia do Bioetanol (CTBE), Campinas, São Paulo, Brazil – name: Centro Nacional de Pesquisa em Energia e Materiais – name: Universidade Estadual de Campinas |
| Author_xml | – sequence: 1 givenname: Ricardo Rodrigues de surname: Melo fullname: Melo, Ricardo Rodrigues de organization: Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Laboratório Nacional de Ciência e Tecnologia do Bioetanol (CTBE), Campinas, São Paulo, Brazil – sequence: 2 givenname: Gabriela Felix surname: Persinoti fullname: Persinoti, Gabriela Felix organization: Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Laboratório Nacional de Ciência e Tecnologia do Bioetanol (CTBE), Campinas, São Paulo, Brazil – sequence: 3 givenname: Douglas Antonio Alvaredo surname: Paixão fullname: Paixão, Douglas Antonio Alvaredo organization: Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Laboratório Nacional de Ciência e Tecnologia do Bioetanol (CTBE), Campinas, São Paulo, Brazil – sequence: 4 givenname: Fábio Márcio surname: Squina fullname: Squina, Fábio Márcio organization: Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Laboratório Nacional de Ciência e Tecnologia do Bioetanol (CTBE), Campinas, São Paulo, Brazil – sequence: 5 givenname: Roberto surname: Ruller fullname: Ruller, Roberto email: roberto.ruller@bioetanol.org.br organization: Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Laboratório Nacional de Ciência e Tecnologia do Bioetanol (CTBE), Campinas, São Paulo, Brazil – sequence: 6 givenname: Helia Harumi surname: Sato fullname: Sato, Helia Harumi email: heliah@fea.unicamp.br organization: Universidade Estadual de Campinas (UNICAMP), Faculdade de Engenharia de Alimentos, Departamento de Ciência de Alimentos, Campinas, São Paulo, Brazil |
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| Cites_doi | 10.1038/srep01030 10.1016/j.jbiotec.2016.02.002 10.1186/1754-6834-5-45 10.1186/1471-2105-14-60 10.1111/j.1574-6976.2009.00206.x 10.1099/ijs.0.02844-0 10.1128/AEM.01133-14 10.1089/cmb.2012.0021 10.1093/nar/gkv657 10.1101/gr.186072.114 10.1155/2013/584207 10.1093/bioinformatics/btu170 10.1128/JB.05583-11 |
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| Copyright | 2017 Sociedade Brasileira de Microbiologia Copyright © 2017 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. All rights reserved. 2017. This work is published under https://creativecommons.org/licenses/by-nc-nd/4.0/deed.en (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. 2017 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. 2017 Sociedade Brasileira de Microbiologia This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License. |
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| Keywords | Streptomyces Draft genome sequence Actinobacteria Glycoside hydrolases Soil bacteria |
| Language | English |
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| Snippet | Here, we show the draft genome sequence of Streptomyces sp. F1, a strain isolated from soil with great potential for secretion of hydrolytic enzymes used to... Here, we show the draft genome sequence of Streptomyces sp. F1, a strain isolated from soil with great potential for secretion of hydrolytic enzymes used to... ABSTRACT Here, we show the draft genome sequence of Streptomyces sp. F1, a strain isolated from soil with great potential for secretion of hydrolytic enzymes... |
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| SubjectTerms | Actinobacteria Bacterial Proteins - genetics Bacterial Proteins - metabolism Base Composition Biomass Brazil Carbohydrates Draft genome sequence Enzymes Genome Announcement Genome, Bacterial Genomes Glycoside hydrolase Glycoside hydrolases Glycoside Hydrolases - genetics Glycoside Hydrolases - metabolism MICROBIOLOGY Multigene Family Nucleotide sequence Phylogeny Proteins Secretion Soil bacteria Soil Microbiology Soil microorganisms Soils Streptomyces Streptomyces - classification Streptomyces - enzymology Streptomyces - genetics Streptomyces - isolation & purification |
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| Title | Draft genome sequence of Streptomyces sp. strain F1, a potential source for glycoside hydrolases isolated from Brazilian soil |
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