Crystal structures of the psychrophilic α‐amylase from Alteromonas haloplanctis in its native form and complexed with an inhibitor

• Published in: Protein science Vol. 7; no. 3; pp. 564 - 572
• Main Authors: Aghajari, Nushin, Haser, Richard, Feller, Georges, Gerday, Charles
• Format: Journal Article
• Language: English
• Published: Bristol Cold Spring Harbor Laboratory Press 01.03.1998; Wiley
• Subjects: allosteric activation; Allosteric Regulation; alpha-Amylases - antagonists & inhibitors; alpha-Amylases - ultrastructure; Bacterial Proteins - ultrastructure; Binding Sites; Biochemistry, Molecular Biology; Buffers; Calcium; Chlorides; cold adaptation; Cold Temperature; crystal structure; Crystallography, X-Ray; Enzyme Inhibitors - chemistry; glycosyl hydrolases; Gram-Negative Bacteria - enzymology; inhibition; Life Sciences; Models, Molecular; Molecular Sequence Data; Protein Structure, Secondary; psychrophilic; Serine Proteinase Inhibitors
• ISSN: 0961-8368; 1469-896X
• DOI: 10.1002/pro.5560070304

Alteromonas haloplanctis is a bacterium that flourishes in Antarctic sea‐water and it is considered as an extreme psychrophile. We have determined the crystal structures of the α‐amylase (AHA) secreted by this bacterium, in its native state to 2.0 Å resolution as well as in complex with Tris to 1.85 Å resolution. The structure of AHA, which is the first experimentally determined three‐dimensional structure of a psychrophilic enzyme, resembles those of other known α‐amylases of various origins with a surprisingly greatest similarity to mammalian α‐amylases. AHA contains a chlorideion which activates the hydrolytic cleavage of substrate α‐l,4‐glycosidic bonds. The chloride binding site is situated ∼5 Å from the active site which is characterized by a triad of acid residues (Asp 174, Glu 200, Asp 264). These are all involved in firm binding of the Tris moiety. A reaction mechanism for substrate hydrolysis is proposed on the basis of the Tris inhibitor binding and the chloride activation.A trio of residues (Ser 303, His 337, Glu 19) having a striking spatial resemblance with serine‐protease like catalytic triads was found ∼22 Å from the active site. We found that this triad is equally present in other chloride dependent α‐amylases, and suggest that it could be responsible for autoproteolytic events observed in solution for this cold adapted α‐amylase.