Identification of key candidate genes and pathways in rheumatoid arthritis and osteoarthritis by integrated bioinformatical analysis

• Published in: Frontiers in genetics Vol. 14; p. 1083615
• Main Authors: Huang, Huijing, Dong, Xinyi, Mao, Kaimin, Pan, Wanwan, Nie, Bin’en, Jiang, Lindi
• Format: Journal Article
• Language: English
• Published: Switzerland Frontiers Media S.A 13.02.2023
• Subjects: differentially expressed genes; Genetics; microarray expression profiling dataset; osteoarthritis; protein-protein interaction network; rheumatoid arthritis; microarray expression profiling dataset; differentially expressed genes; protein-protein interaction network; rheumatoid arthritis; osteoarthritis
• ISSN: 1664-8021; 1664-8021
• DOI: 10.3389/fgene.2023.1083615

Rheumatoid arthritis (RA) and osteoarthritis (OA) are the most common joint disorders. Although they have shown analogous clinical manifestations, the pathogenesis of RA and OA are different. In this study, we used the online Gene Expression Omnibus (GEO) microarray expression profiling dataset GSE153015 to identify gene signatures between RA and OA joints. The relevant data on 8 subjects obtained from large joints of RA patients (RA-LJ), 8 subjects obtained from small joints of RA patients (RA-SJ), and 4 subjects with OA were investigated. Differentially expressed genes (DEGs) were screened. Functional enrichment analysis of DEGs including the Gene Ontology terms and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways were identified, which were mainly associated with T cell activation or chemokine activity. Besides, protein-protein interaction (PPI) network analysis was performed, and key modules were identified. Hub genes of RA-LJ and OA groups were screened, they were CD8A , GZMB , CCL5 , CD2, and CXCL9 , whereas CD8A , CD2 , IL7R , CD27, and GZMB were hub genes of RA-SJ and OA group. The novel DEGs and functional pathways between RA and OA identified in this study may provide new insight into the underlying molecular mechanisms and therapeutic strategies of RA and OA.