An algorithm for the typing of enteroviruses and correlation to serotyping by viral neutralization

• Published in: Journal of clinical virology Vol. 45; no. 4; pp. 334 - 340
• Main Authors: Kiang, David, Newbower, Elly Chou, Yeh, Elaine, Wold, Lauren, Chen, Lily, Schnurr, David P
• Format: Journal Article
• Language: English
• Published: Amsterdam Elsevier B.V 01.08.2009; Elsevier
• Subjects: Algorithms; Allergy and Immunology; Antigens, Viral - analysis; Biological and medical sciences; Cluster Analysis; Enterovirus; Enterovirus - classification; Enterovirus - genetics; Enterovirus - immunology; Fluorescent Antibody Technique, Direct - methods; Fundamental and applied biological sciences. Psychology; Genotype; Genotyping; Hepatitis E virus; Human viral diseases; Humans; Immunofluorescence; Infectious Disease; Infectious diseases; Medical sciences; Microbiology; Miscellaneous; Molecular Sequence Data; Neutralization Tests; Phylogenetics; Phylogeny; Reverse Transcriptase Polymerase Chain Reaction - methods; RNA, Viral - genetics; Sequence Analysis, DNA; Sequence Homology; Serotyping; Viral diseases; Virology; Phylogenetics; Enterovirus; Genotyping; Immunofluorescence; Typing; Microbiology; Picornaviridae; Genotype; Phylogeny; Algorithm; Virology; Virus; Serotype; Neutralization
• ISSN: 1386-6532; 1873-5967
• DOI: 10.1016/j.jcv.2009.05.035

Abstract Background Human enteroviruses (HEVs) are common pathogens which cause a broad spectrum of illnesses ranging from asymptomatic infection to acute myocarditis and aseptic meningitis. The neutralization assay for serotype determination is labor-intensive and time-consuming. There is a need for a methodology that is more rapid and widely accessible. Objectives Our goals were to develop an algorithm to type enteroviruses which combines both serologic typing, based on indirect immunofluorescence assay (IFA) using type-specific monoclonal antibodies (mAbs) and genotyping, by DNA sequence analysis and to assess the correlation of both IFA and genotyping to traditional viral neutralization by type-specific antisera. Study design Clinical specimens initially determined to be enterovirus positive by nucleic acid detection were grown in cell culture and typed using mAbs. Specimens that could not be typed by mAbs were subject to molecular analysis. Genotyping was performed by a combination of either a primary or semi-nested RT-PCR for a region within VP3/VP1 and followed by direct DNA sequencing of PCR products. Database homology comparisons and phylogenetic analysis were performed based on a defined region (303 nt) within the VP1 gene. Results We inoculated 134 enterovirus nucleic acid amplification-positive specimens into culture and 115 (86%) of these isolates were successfully typed by this algorithm. We have demonstrated a strong correlation between serotyping by viral neutralization to both IFA by type-specific mAbs and genotyping. Conclusions Typing of human enteroviruses can be effectively performed using an integration of antibody-based and molecular methods.