Genetic diversity and genome-wide association analysis of pine wood nematode populations in different regions of China

• Published in: Frontiers in plant science Vol. 14; p. 1183772
• Main Authors: Aixia, Yang, Xiaolei, Ding, Yuan, Feng, Ruiwen, Zhao, Jianren, Ye
• Format: Journal Article
• Language: English
• Published: Switzerland Frontiers Media S.A 23.06.2023
• Subjects: Bursaphelenchus xylophilus; genetic diversity; genome-wide association study; Plant Science; SNP; temperature tolerance; genetic diversity; SNP; temperature tolerance; Bursaphelenchus xylophilus; genome-wide association study
• ISSN: 1664-462X; 1664-462X
• DOI: 10.3389/fpls.2023.1183772

Pine wilt disease ( ) was recently detected in Liaoning Province, which was previously considered an unfavourable area for due to its low temperatures. This study aims to compare the reproductivity and genetic variations of isolates from Liaoning Province and other parts of China to explore their phenotypic and genomic differences. The samples from Liaoning, Anhui, Hubei, Henan, Zhejiang and Jiangsu were isolated and purified to obtain the strains. The reproductivity of the strains was determined at 15 °C. The genetic structure was analyzed by using SNP molecular markers, and the whole genome association analysis was carried out by integrating SNP information and feculence traits. A reproductivity experiment showed that Liaoning isolates have higher reproductive ability at 15 °C. Subsequent SNP profiling and population differentiation analysis revealed obvious genetic differentiation of Liaoning isolates from other isolates. A genome-wide association study showed that SNPs closely related to low-temperature tolerance were mainly located in GPCR, Acyl-CoA, and Cpn10, which are responsible for adaptation to environmental factors, such as temperature change. Pine wood nematodes likely adapted to the climate in Liaoning and maintained a certain reproductive capacity at low temperature via variants of adaptation-related genes. This study provides a theoretical basis for elucidating the prevalence and diffusion status of in China.