Dual domestications and origin of traits in grapevine evolution

We elucidate grapevine evolution and domestication histories with 3525 cultivated and wild accessions worldwide. In the Pleistocene, harsh climate drove the separation of wild grape ecotypes caused by continuous habitat fragmentation. Then, domestication occurred concurrently about 11,000 years ago...

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Published inScience (American Association for the Advancement of Science) Vol. 379; no. 6635; pp. 892 - 901
Main Authors Dong, Yang, Duan, Shengchang, Xia, Qiuju, Liang, Zhenchang, Dong, Xiao, Margaryan, Kristine, Musayev, Mirza, Goryslavets, Svitlana, Zdunić, Goran, Bert, Pierre-François, Lacombe, Thierry, Maul, Erika, Nick, Peter, Bitskinashvili, Kakha, Bisztray, György Dénes, Drori, Elyashiv, De Lorenzis, Gabriella, Cunha, Jorge, Popescu, Carmen Florentina, Arroyo-Garcia, Rosa, Arnold, Claire, Ergül, Ali, Zhu, Yifan, Ma, Chao, Wang, Shufen, Liu, Siqi, Tang, Liu, Wang, Chunping, Li, Dawei, Pan, Yunbing, Li, Jingxian, Yang, Ling, Li, Xuzhen, Xiang, Guisheng, Yang, Zijiang, Chen, Baozheng, Dai, Zhanwu, Wang, Yi, Arakelyan, Arsen, Kuliyev, Varis, Spotar, Gennady, Girollet, Nabil, Delrot, Serge, Ollat, Nathalie, This, Patrice, Marchal, Cécile, Sarah, Gautier, Laucou, Valérie, Bacilieri, Roberto, Röckel, Franco, Guan, Pingyin, Jung, Andreas, Riemann, Michael, Ujmajuridze, Levan, Zakalashvili, Tekle, Maghradze, David, Höhn, Maria, Jahnke, Gizella, Kiss, Erzsébet, Deák, Tamás, Rahimi, Oshrit, Hübner, Sariel, Grassi, Fabrizio, Mercati, Francesco, Sunseri, Francesco, Eiras-Dias, José, Dumitru, Anamaria Mirabela, Carrasco, David, Rodriguez-Izquierdo, Alberto, Muñoz, Gregorio, Uysal, Tamer, Özer, Cengiz, Kazan, Kemal, Xu, Meilong, Wang, Yunyue, Zhu, Shusheng, Lu, Jiang, Zhao, Maoxiang, Wang, Lei, Jiu, Songtao, Zhang, Ying, Sun, Lei, Yang, Huanming, Weiss, Ehud, Wang, Shiping, Zhu, Youyong, Li, Shaohua, Sheng, Jun, Chen, Wei
Format Journal Article
LanguageEnglish
Published United States The American Association for the Advancement of Science 03.03.2023
American Association for the Advancement of Science (AAAS)
Subjects
Acclimatization
Agriculture
Asia, Western
Biological Evolution
Climate effects
Cultivars
Cultivation
Domestication
Ecotype
Environmental Sciences
Fruit cultivation
Fruits
Grapes
Grapevines
Humans
Palatability
Phenotype
Vitaceae
Vitis - genetics
Wine
Wines
Asia, Western
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Abstract We elucidate grapevine evolution and domestication histories with 3525 cultivated and wild accessions worldwide. In the Pleistocene, harsh climate drove the separation of wild grape ecotypes caused by continuous habitat fragmentation. Then, domestication occurred concurrently about 11,000 years ago in Western Asia and the Caucasus to yield table and wine grapevines. The Western Asia domesticates dispersed into Europe with early farmers, introgressed with ancient wild western ecotypes, and subsequently diversified along human migration trails into muscat and unique western wine grape ancestries by the late Neolithic. Analyses of domestication traits also reveal new insights into selection for berry palatability, hermaphroditism, muscat flavor, and berry skin color. These data demonstrate the role of the grapevines in the early inception of agriculture across Eurasia. Humans have extensively shaped the organisms around us through domestication. Although wine and table grapes have been important culturally for thousands of years, their origin has been difficult to pinpoint because of uneven sampling of modern cultivars. Dong et al . analyzed genetic data from about 3500 cultivated and wild grape varieties from around the world (see the Perspective by Allaby). The results of their analysis reveal the effects of climate on historic population sizes, suggest concurrent domestications of wine and table grapes, and identify variants associated with domestication traits such as berry color and palatability. These results increase our understanding of how humans and the environment shaped this domesticated crop. —CNS Grapevine genetics reveal multiple domestication events, including the concurrent rise of table and wine grape varieties.
AbstractList We elucidate grapevine evolution and domestication histories with 3525 cultivated and wild accessions worldwide. In the Pleistocene, harsh climate drove the separation of wild grape ecotypes caused by continuous habitat fragmentation. Then, domestication occurred concurrently about 11,000 years ago in Western Asia and the Caucasus to yield table and wine grapevines. The Western Asia domesticates dispersed into Europe with early farmers, introgressed with ancient wild western ecotypes, and subsequently diversified along human migration trails into muscat and unique western wine grape ancestries by the late Neolithic. Analyses of domestication traits also reveal new insights into selection for berry palatability, hermaphroditism, muscat flavor, and berry skin color. These data demonstrate the role of the grapevines in the early inception of agriculture across Eurasia.
We elucidate grapevine evolution and domestication histories with 3525 cultivated and wild accessions worldwide. In the Pleistocene, harsh climate drove the separation of wild grape ecotypes caused by continuous habitat fragmentation. Then, domestication occurred concurrently about 11,000 years ago in Western Asia and the Caucasus to yield table and wine grapevines. The Western Asia domesticates dispersed into Europe with early farmers, introgressed with ancient wild western ecotypes, and subsequently diversified along human migration trails into muscat and unique western wine grape ancestries by the late Neolithic. Analyses of domestication traits also reveal new insights into selection for berry palatability, hermaphroditism, muscat flavor, and berry skin color. These data demonstrate the role of the grapevines in the early inception of agriculture across Eurasia. Humans have extensively shaped the organisms around us through domestication. Although wine and table grapes have been important culturally for thousands of years, their origin has been difficult to pinpoint because of uneven sampling of modern cultivars. Dong et al . analyzed genetic data from about 3500 cultivated and wild grape varieties from around the world (see the Perspective by Allaby). The results of their analysis reveal the effects of climate on historic population sizes, suggest concurrent domestications of wine and table grapes, and identify variants associated with domestication traits such as berry color and palatability. These results increase our understanding of how humans and the environment shaped this domesticated crop. —CNS Grapevine genetics reveal multiple domestication events, including the concurrent rise of table and wine grape varieties.
Origins and domestication of grapevinesHumans have extensively shaped the organisms around us through domestication. Although wine and table grapes have been important culturally for thousands of years, their origin has been difficult to pinpoint because of uneven sampling of modern cultivars. Dong et al. analyzed genetic data from about 3500 cultivated and wild grape varieties from around the world (see the Perspective by Allaby). The results of their analysis reveal the effects of climate on historic population sizes, suggest concurrent domestications of wine and table grapes, and identify variants associated with domestication traits such as berry color and palatability. These results increase our understanding of how humans and the environment shaped this domesticated crop. —CNS
We elucidate grapevine evolution and domestication histories with 3525 cultivated and wild accessions worldwide. In the Pleistocene, harsh climate drove the separation of wild grape ecotypes caused by continuous habitat fragmentation. Then, domestication occurred concurrently about 11,000 years ago in Western Asia and the Caucasus to yield table and wine grapevines. The Western Asia domesticates dispersed into Europe with early farmers, introgressed with ancient wild western ecotypes, and subsequently diversified along human migration trails into muscat and unique western wine grape ancestries by the late Neolithic. Analyses of domestication traits also reveal new insights into selection for berry palatability, hermaphroditism, muscat flavor, and berry skin color. These data demonstrate the role of the grapevines in the early inception of agriculture across Eurasia.We elucidate grapevine evolution and domestication histories with 3525 cultivated and wild accessions worldwide. In the Pleistocene, harsh climate drove the separation of wild grape ecotypes caused by continuous habitat fragmentation. Then, domestication occurred concurrently about 11,000 years ago in Western Asia and the Caucasus to yield table and wine grapevines. The Western Asia domesticates dispersed into Europe with early farmers, introgressed with ancient wild western ecotypes, and subsequently diversified along human migration trails into muscat and unique western wine grape ancestries by the late Neolithic. Analyses of domestication traits also reveal new insights into selection for berry palatability, hermaphroditism, muscat flavor, and berry skin color. These data demonstrate the role of the grapevines in the early inception of agriculture across Eurasia.
Author Dong, Xiao
Cunha, Jorge
This, Patrice
Chen, Baozheng
Arakelyan, Arsen
Sarah, Gautier
Laucou, Valérie
Riemann, Michael
Maghradze, David
Hübner, Sariel
Grassi, Fabrizio
Xia, Qiuju
Xu, Meilong
Rahimi, Oshrit
Zdunić, Goran
Zakalashvili, Tekle
Bacilieri, Roberto
Liu, Siqi
Yang, Huanming
Deák, Tamás
Höhn, Maria
Jahnke, Gizella
Uysal, Tamer
Rodriguez-Izquierdo, Alberto
Zhu, Youyong
Li, Dawei
Delrot, Serge
Kuliyev, Varis
Li, Xuzhen
Yang, Zijiang
De Lorenzis, Gabriella
Wang, Shufen
Jung, Andreas
Pan, Yunbing
Özer, Cengiz
Nick, Peter
Margaryan, Kristine
Kiss, Erzsébet
Guan, Pingyin
Zhang, Ying
Sun, Lei
Bisztray, György Dénes
Zhu, Shusheng
Bitskinashvili, Kakha
Ujmajuridze, Levan
Carrasco, David
Sunseri, Francesco
Dumitru, Anamaria Mirabela
Tang, Liu
Wang, Chunping
Jiu, Songtao
Li, Jingxian
Eiras-Dias, José
Li, Shaohua
Ollat, Nathalie
Zhao, Maoxiang
Sheng, Jun
Röckel, Franco
Liang, Zhenchang
Arroyo-Garcia, Rosa
Maul, Erika
Dai, Zhanwu
Mercati, Francesco
Zhu, Yifan
Xiang, Guisheng
Spotar, Gennady
Wang, Shiping
Marchal, Cécile
Ergül, Ali
Girollet, Nabil
Muñoz, Gregor
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  givenname: Oshrit
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  fullname: Rahimi, Oshrit
  organization: Department of Chemical Engineering, Ariel University, 40700 Ariel, Israel
– sequence: 62
  givenname: Sariel
  orcidid: 0000-0003-3660-4634
  surname: Hübner
  fullname: Hübner, Sariel
  organization: Galilee Research Institute (Migal), Tel-Hai Academic College, 12210 Upper Galilee, Israel
– sequence: 63
  givenname: Fabrizio
  orcidid: 0000-0003-3606-6469
  surname: Grassi
  fullname: Grassi, Fabrizio
  organization: Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126 Milano, Italy., NBFC, National Biodiversity Future Center, 90133 Palermo, Italy
– sequence: 64
  givenname: Francesco
  orcidid: 0000-0003-1356-2881
  surname: Mercati
  fullname: Mercati, Francesco
  organization: Institute of Biosciences and Bioresources, National Research Council, 90129 Palermo, Italy
– sequence: 65
  givenname: Francesco
  orcidid: 0000-0001-5201-5413
  surname: Sunseri
  fullname: Sunseri, Francesco
  organization: Department AGRARIA, University Mediterranea of Reggio Calabria, Reggio 89122 Calabria, Italy
– sequence: 66
  givenname: José
  orcidid: 0000-0001-7997-8199
  surname: Eiras-Dias
  fullname: Eiras-Dias, José
  organization: Instituto Nacional de Investigação Agrária e Veterinária, I.P./INIAV-Dois Portos, 2565-191 Torres Vedras, Portugal., Green-it Unit, Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, 2780-157 Oeiras, Portugal
– sequence: 67
  givenname: Anamaria Mirabela
  orcidid: 0000-0001-7160-0036
  surname: Dumitru
  fullname: Dumitru, Anamaria Mirabela
  organization: National Research and Development Institute for Biotechnology in Horticulture, Stefanesti, 117715 Arges, Romania
– sequence: 68
  givenname: David
  orcidid: 0000-0002-0551-820X
  surname: Carrasco
  fullname: Carrasco, David
  organization: Center for Plant Biotechnology and Genomics, UPM-INIA/CSIC, Pozuelo de Alarcon, 28223 Madrid, Spain
– sequence: 69
  givenname: Alberto
  orcidid: 0000-0003-4755-3086
  surname: Rodriguez-Izquierdo
  fullname: Rodriguez-Izquierdo, Alberto
  organization: Center for Plant Biotechnology and Genomics, UPM-INIA/CSIC, Pozuelo de Alarcon, 28223 Madrid, Spain
– sequence: 70
  givenname: Gregorio
  orcidid: 0000-0003-1186-3517
  surname: Muñoz
  fullname: Muñoz, Gregorio
  organization: IMIDRA, Alcalá de Henares, 28805 Madrid, Spain
– sequence: 71
  givenname: Tamer
  orcidid: 0000-0003-0171-0605
  surname: Uysal
  fullname: Uysal, Tamer
  organization: Viticulture Research Institute, Ministry of Agriculture and Forestry, 59200 Tekirdağ, Turkey
– sequence: 72
  givenname: Cengiz
  orcidid: 0000-0002-9833-3975
  surname: Özer
  fullname: Özer, Cengiz
  organization: Viticulture Research Institute, Ministry of Agriculture and Forestry, 59200 Tekirdağ, Turkey
– sequence: 73
  givenname: Kemal
  orcidid: 0000-0002-5169-8934
  surname: Kazan
  fullname: Kazan, Kemal
  organization: Queensland Alliance for Agriculture and Food Innovation, University of Queensland, St. Lucia, Queensland 4072, Australia
– sequence: 74
  givenname: Meilong
  surname: Xu
  fullname: Xu, Meilong
  organization: Institute of Horticulture, Ningxia Academy of Agricultural and Forestry Sciences, Yinchuan 750002, China
– sequence: 75
  givenname: Yunyue
  orcidid: 0000-0002-2421-5087
  surname: Wang
  fullname: Wang, Yunyue
  organization: State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming 650201, China
– sequence: 76
  givenname: Shusheng
  orcidid: 0000-0003-0659-3794
  surname: Zhu
  fullname: Zhu, Shusheng
  organization: State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming 650201, China
– sequence: 77
  givenname: Jiang
  orcidid: 0000-0001-6819-5607
  surname: Lu
  fullname: Lu, Jiang
  organization: Center for Viticulture and Oenology, School of Agriculture and Biology, Shanghai JiaoTong University, Shanghai 200240, China
– sequence: 78
  givenname: Maoxiang
  surname: Zhao
  fullname: Zhao, Maoxiang
  organization: Department of Plant Science, School of Agriculture and Biology, Shanghai JiaoTong University, Shanghai 200240, China
– sequence: 79
  givenname: Lei
  surname: Wang
  fullname: Wang, Lei
  organization: Department of Plant Science, School of Agriculture and Biology, Shanghai JiaoTong University, Shanghai 200240, China
– sequence: 80
  givenname: Songtao
  surname: Jiu
  fullname: Jiu, Songtao
  organization: Department of Plant Science, School of Agriculture and Biology, Shanghai JiaoTong University, Shanghai 200240, China
– sequence: 81
  givenname: Ying
  surname: Zhang
  fullname: Zhang, Ying
  organization: Zhengzhou Fruit Research Institutes, CAAS, Zhengzhou 450009, China
– sequence: 82
  givenname: Lei
  surname: Sun
  fullname: Sun, Lei
  organization: Zhengzhou Fruit Research Institutes, CAAS, Zhengzhou 450009, China
– sequence: 83
  givenname: Huanming
  orcidid: 0000-0002-0858-3410
  surname: Yang
  fullname: Yang, Huanming
  organization: BGI-Shenzhen, Shenzhen 518083, China
– sequence: 84
  givenname: Ehud
  orcidid: 0000-0002-9730-4726
  surname: Weiss
  fullname: Weiss, Ehud
  organization: The Martin (Szusz) Department of Land of Israel Studies and Archaeology, Bar-Ilan University, 5290002 Ramat-Gan, Israel
– sequence: 85
  givenname: Shiping
  orcidid: 0000-0003-2134-8391
  surname: Wang
  fullname: Wang, Shiping
  organization: Department of Plant Science, School of Agriculture and Biology, Shanghai JiaoTong University, Shanghai 200240, China
– sequence: 86
  givenname: Youyong
  orcidid: 0000-0001-5878-482X
  surname: Zhu
  fullname: Zhu, Youyong
  organization: State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming 650201, China
– sequence: 87
  givenname: Shaohua
  orcidid: 0000-0001-7707-206X
  surname: Li
  fullname: Li, Shaohua
  organization: Beijing Key Laboratory of Grape Science and Oenology and Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China
– sequence: 88
  givenname: Jun
  orcidid: 0000-0002-5115-8145
  surname: Sheng
  fullname: Sheng, Jun
  organization: State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming 650201, China., Yunnan Research Institute for Local Plateau Agriculture and Industry, Kunming 650201, China
– sequence: 89
  givenname: Wei
  orcidid: 0000-0002-6383-7540
  surname: Chen
  fullname: Chen, Wei
  organization: State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming 650201, China., Yunnan Research Institute for Local Plateau Agriculture and Industry, Kunming 650201, China
BackLink https://www.ncbi.nlm.nih.gov/pubmed/36862793$$D View this record in MEDLINE/PubMed
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Snippet We elucidate grapevine evolution and domestication histories with 3525 cultivated and wild accessions worldwide. In the Pleistocene, harsh climate drove the...
Origins and domestication of grapevinesHumans have extensively shaped the organisms around us through domestication. Although wine and table grapes have been...
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SubjectTerms Acclimatization
Agriculture
Asia, Western
Biological Evolution
Climate effects
Cultivars
Cultivation
Domestication
Ecotype
Environmental Sciences
Fruit cultivation
Fruits
Grapes
Grapevines
Humans
Palatability
Phenotype
Vitaceae
Vitis - genetics
Wine
Wines
Title Dual domestications and origin of traits in grapevine evolution
URI https://www.ncbi.nlm.nih.gov/pubmed/36862793
https://www.proquest.com/docview/2781348385
https://www.proquest.com/docview/2783493361
https://hal.inrae.fr/hal-04159992
Volume 379
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