Selection and Validation of the Optimal Panel of Reference Genes for RT-qPCR Analysis in the Developing Rat Cartilage

• Published in: Frontiers in genetics Vol. 11; p. 590124
• Main Authors: Liu, Liang, Han, Hui, Li, Qingxian, Chen, Ming, Zhou, Siqi, Wang, Hui, Chen, Liaobin
• Format: Journal Article
• Language: English
• Published: Switzerland Frontiers Media S.A 16.12.2020
• Subjects: cartilage development; Genetics; intrauterine growth retardation; prenatal dexamethasone exposure; real-time quantitative polymerase chain reaction; the panel of reference genes; real-time quantitative polymerase chain reaction; intrauterine growth retardation; prenatal dexamethasone exposure; the panel of reference genes; cartilage development
• ISSN: 1664-8021; 1664-8021
• DOI: 10.3389/fgene.2020.590124

Real-time fluorescence quantitative PCR (RT-qPCR) is widely used to detect gene expression levels, and selection of reference genes is crucial to the accuracy of RT-qPCR results. Minimum Information for Publication of RT-qPCR Experiments (MIQE) proposes that using the panel of reference genes for RT-qPCR is conducive to obtaining accurate experimental results. However, the selection of the panel of reference genes for RT-qPCR in rat developing cartilage has not been well documented. In this study, we selected eight reference genes commonly used in rat cartilage from literature ( , and ) as candidates. Then, we screened out the optimal panel of reference genes in female and male rat cartilage of fetus (GD20), juvenile (PW6), and puberty (PW12) in physiology with stability analysis software of genes expression. Finally, we verified the reliability of the selected panel of reference genes with the rat model of intrauterine growth retardation (IUGR) induced by prenatal dexamethasone exposure (PDE). The results showed that the optimal panel of reference genes in cartilage at GD20, PW6, and PW12 in physiology was + , which was consistent with the IUGR model, and there was no significant gender difference. Further, the results of standardizing the target genes showed that + performed smaller intragroup differences than other panels of reference genes or single reference genes. In conclusion, we found that the optimal panel of reference genes in female and male rat developing cartilage was + , and there was no noticeable difference before and after birth.