Establishment and Application of Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry for Detection of Shewanella Genus

• Published in: Frontiers in microbiology Vol. 12; p. 625821
• Main Authors: Yu, Keyi, Huang, Zhenzhou, Li, Ying, Fu, Qingbo, Lin, Lirong, Wu, Shiyao, Dai, Hang, Cai, Hongyan, Xiao, Yue, Lan, Ruiting, Wang, Duochun
• Format: Journal Article
• Language: English
• Published: Switzerland Frontiers Media S.A 18.02.2021
• Subjects: detection; establishment and application; MALDI-TOF mass spectrometry; Microbiology; multilocus sequence analysis; Shewanella; multilocus sequence analysis; MALDI-TOF mass spectrometry; establishment and application; detection; Shewanella
• ISSN: 1664-302X; 1664-302X
• DOI: 10.3389/fmicb.2021.625821

species are widely distributed in the aquatic environment and aquatic organisms. They are opportunistic human pathogens with increasing clinical infections reported in recent years. However, there is a lack of a rapid and accurate method to identify species. We evaluated here matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) for rapid identification of A peptide mass reference spectra (PMRS) database was constructed for the type strains of 36 species. The main spectrum projection (MSP) cluster dendrogram showed that the type strains of species can be effectively distinguished according to the different MS fingerprinting. The PMRS database was validated using 125 test strains isolated from various sources and periods; 92.8% ( = 116) of the strains were correctly identified at the species level, compared with the results of multilocus sequence analysis (MLSA), which was previously shown to be a method for identifying at the species level. The misidentified strains ( = 9) by MALDI-TOF MS involved five species of two groups, i.e., - - and - . We then identified and defined species-specific biomarker peaks of the 36 species using the type strains and validated these selected biomarkers using 125 test strains. Our study demonstrated that MALDI-TOF MS was a reliable and powerful tool for the rapid identification of strains at the species level.