In Silico Screening of the Human Gut Metaproteome Identifies Th17-Promoting Peptides Encrypted in Proteins of Commensal Bacteria

• Published in: Frontiers in microbiology Vol. 8; p. 1726
• Main Authors: Hidalgo-Cantabrana, Claudio, Moro-García, Marco A, Blanco-Míguez, Aitor, Fdez-Riverola, Florentino, Lourenço, Anália, Alonso-Arias, Rebeca, Sánchez, Borja
• Format: Journal Article
• Language: English
• Published: Switzerland Frontiers Media S.A 08.09.2017
• Subjects: bacterial peptides; CD4 cytokines; flow cytometry; gut metaproteome; Microbiology; microbiome; Th17 response; gut metaproteome; flow cytometry; CD4 cytokines; Th17 response; microbiome; bacterial peptides
• ISSN: 1664-302X; 1664-302X
• DOI: 10.3389/fmicb.2017.01726

Scientific studies focused on the role of the human microbiome over human health have generated billions of gigabits of genetic information during the last decade. Nowadays integration of all this information in public databases and development of pipelines allowing us to biotechnologically exploit this information are urgently needed. Prediction of the potential bioactivity of the products encoded by the human gut microbiome, or metaproteome, is the first step for identifying proteins responsible for the molecular interaction between microorganisms and the immune system. We have recently published the Mechanism of Action of the Human Microbiome (MAHMI) database (http://www.mahmi.org), conceived as a resource compiling peptide sequences with a potential immunomodulatory activity. Fifteen out of the 300 hundred million peptides contained in the MAHMI database were synthesized. These peptides were identified as being encrypted in proteins produced by gut microbiota members, they do not contain cleavage points for the major intestinal endoproteases and displayed high probability to have immunomodulatory bioactivity. The bacterial peptides FR-16 and LR-17 encrypted in proteins from DJ010A and YCH46 respectively, showed the higher immune modulation capability over human peripheral blood mononuclear cells. Both peptides modulated the immune response toward increases in the Th17 and decreases in the Th1 cell response, together with an induction of IL-22 production. These results strongly suggest the combined use of bioinformatics and tools as a first stage in the screening of bioactive peptides encrypted in the human gut metaproteome.