HumMod: A Modeling Environment for the Simulation of Integrative Human Physiology

• Published in: Frontiers in physiology Vol. 2; p. 12
• Main Authors: Hester, Robert L, Brown, Alison J, Husband, Leland, Iliescu, Radu, Pruett, Drew, Summers, Richard, Coleman, Thomas G
• Format: Journal Article
• Language: English
• Published: Switzerland Frontiers Research Foundation 01.01.2011; Frontiers Media S.A
• Subjects: HumMod; Integrative Physiology; Physiology; physiome; HumMod; model; physiome; integrative physiology
• ISSN: 1664-042X; 1664-042X
• DOI: 10.3389/fphys.2011.00012

Mathematical models and simulations are important tools in discovering key causal relationships governing physiological processes. Simulations guide and improve outcomes of medical interventions involving complex physiology. We developed HumMod, a Windows-based model of integrative human physiology. HumMod consists of 5000 variables describing cardiovascular, respiratory, renal, neural, endocrine, skeletal muscle, and metabolic physiology. The model is constructed from empirical data obtained from peer-reviewed physiological literature. All model details, including variables, parameters, and quantitative relationships, are described in Extensible Markup Language (XML) files. The executable (HumMod.exe) parses the XML and displays the results of the physiological simulations. The XML description of physiology in HumMod's modeling environment allows investigators to add detailed descriptions of human physiology to test new concepts. Additional or revised XML content is parsed and incorporated into the model. The model accurately predicts both qualitative and quantitative changes in clinical and experimental responses. The model is useful in understanding proposed physiological mechanisms and physiological interactions that are not evident, allowing one to observe higher level emergent properties of the complex physiological systems. HumMod has many uses, for instance, analysis of renal control of blood pressure, central role of the liver in creating and maintaining insulin resistance, and mechanisms causing orthostatic hypotension in astronauts. Users simulate different physiological and pathophysiological situations by interactively altering numerical parameters and viewing time-dependent responses. HumMod provides a modeling environment to understand the complex interactions of integrative physiology. HumMod can be downloaded at http://hummod.org.