Genome-wide family-based study in torus palatinus affected individuals

• Published in: Archives of oral biology Vol. 130; p. 105221
• Main Authors: Bezamat, Mariana, Zhou, Yuqiao, Park, Timothy, Vieira, Alexandre R.
• Format: Journal Article
• Language: English
• Published: Elsevier Ltd 01.10.2021
• Subjects: Exostosis; Genetic variation; GWAS; Torus palatinus; Transmission disequilibrium test; Transmission disequilibrium test; GWAS; Torus palatinus; Genetic variation; Exostosis
• ISSN: 0003-9969; 1879-1506
• DOI: 10.1016/j.archoralbio.2021.105221

•Fourteen SNPs had statistical evidence for an association with torus palatinus.•The CAPS2 gene showed the biggest difference in genotype distribution.•The C allele of the CAPS2 variant confers lower risk of developing torus palatinus.•Genotyping frequencies of CAPS2 variant were different between females and males. Tori or exostoses are bony growths that appear in different oral regions. Torus palatinus, more specifically, develop in the palate midline and can impair proper word pronunciation and hinder the fabrication and use of dentures. Even though a multifactorial inheritance model has been suggested for torus palatinus appearance, precise genetic factors involved in its etiology remain unclear. Hence, in this study we aimed to identify variants across the genome of individuals from 46 Filipino families that associate with torus palatinus. All families were composed of fishermen or landless rural dwellers who provided blood samples for DNA extraction and genotyping. A total of 3519 single nucleotide polymorphisms (SNPs) were analyzed through a transmission disequilibrium test in individuals affected by torus palatinus and their unaffected family members. Fourteen SNPs showed trends for associations to the level of p < .005 threshold and several others were nominally (p < .05) associated with torus palatinus. We highlight SNP rs6582285, which is located in the CAPS2 gene, being the C allele less transmitted than the T allele in our sample. The C allele of CAPS2 rs6582285 protects from having torus palatinus whereas the other associations found were linked to an increased risk of developing the condition. Trends for associations were identified for several markers across the genome, supporting the hypothesis that torus palatinus has a multifactorial mode of inheritance. We hope that our study contributes to a better understanding of torus palatinus etiology and helps guide future research in examining genes for this often-overlooked condition in different populations.