Enrichment and separation techniques for large-scale proteomics analysis of the protein post-translational modifications
•Major protein post-translational modifications (PTMs) and their enrichment strategies.•The challenges encountered in the current PTMs enrichment methods.•Separation strategies of PTM peptides for large scale PTMs analysis. Comprehensive analysis of the post-translational modifications (PTMs) on pro...
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| Published in | Journal of Chromatography A Vol. 1372; pp. 1 - 17 |
|---|---|
| Main Authors | , , , |
| Format | Journal Article |
| Language | English |
| Published |
Amsterdam
Elsevier B.V
12.12.2014
Elsevier |
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| Online Access | Get full text |
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| Abstract | •Major protein post-translational modifications (PTMs) and their enrichment strategies.•The challenges encountered in the current PTMs enrichment methods.•Separation strategies of PTM peptides for large scale PTMs analysis.
Comprehensive analysis of the post-translational modifications (PTMs) on proteins at proteome level is crucial to elucidate the regulatory mechanisms of various biological processes. In the past decades, thanks to the development of specific PTM enrichment techniques and efficient multidimensional liquid chromatography (LC) separation strategy, the identification of protein PTMs have made tremendous progress. A huge number of modification sites for some major protein PTMs have been identified by proteomics analysis. In this review, we first introduced the recent progresses of PTM enrichment methods for the analysis of several major PTMs including phosphorylation, glycosylation, ubiquitination, acetylation, methylation, and oxidation/reduction status. We then briefly summarized the challenges for PTM enrichment. Finally, we introduced the fractionation and separation techniques for efficient separation of PTM peptides in large-scale PTM analysis. |
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| AbstractList | •Major protein post-translational modifications (PTMs) and their enrichment strategies.•The challenges encountered in the current PTMs enrichment methods.•Separation strategies of PTM peptides for large scale PTMs analysis.
Comprehensive analysis of the post-translational modifications (PTMs) on proteins at proteome level is crucial to elucidate the regulatory mechanisms of various biological processes. In the past decades, thanks to the development of specific PTM enrichment techniques and efficient multidimensional liquid chromatography (LC) separation strategy, the identification of protein PTMs have made tremendous progress. A huge number of modification sites for some major protein PTMs have been identified by proteomics analysis. In this review, we first introduced the recent progresses of PTM enrichment methods for the analysis of several major PTMs including phosphorylation, glycosylation, ubiquitination, acetylation, methylation, and oxidation/reduction status. We then briefly summarized the challenges for PTM enrichment. Finally, we introduced the fractionation and separation techniques for efficient separation of PTM peptides in large-scale PTM analysis. Comprehensive analysis of the post-translational modifications (PTMs) on proteins at proteome level is crucial to elucidate the regulatory mechanisms of various biological processes. In the past decades, thanks to the development of specific PTM enrichment techniques and efficient multidimensional liquid chromatography (LC) separation strategy, the identification of protein PTMs have made tremendous progress. A huge number of modification sites for some major protein PTMs have been identified by proteomics analysis. In this review, we first introduced the recent progresses of PTM enrichment methods for the analysis of several major PTMs including phosphorylation, glycosylation, ubiquitination, acetylation, methylation, and oxidation/reduction status. We then briefly summarized the challenges for PTM enrichment. Finally, we introduced the fractionation and separation techniques for efficient separation of PTM peptides in large-scale PTM analysis. |
| Author | Wang, Fangjun Huang, Junfeng Ye, Mingliang Zou, Hanfa |
| Author_xml | – sequence: 1 givenname: Junfeng surname: Huang fullname: Huang, Junfeng organization: CAS Key Laboratory of Separation Sciences for Analytical Chemistry, National Chromatographic R&A Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China – sequence: 2 givenname: Fangjun surname: Wang fullname: Wang, Fangjun organization: CAS Key Laboratory of Separation Sciences for Analytical Chemistry, National Chromatographic R&A Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China – sequence: 3 givenname: Mingliang surname: Ye fullname: Ye, Mingliang email: mingliang@dicp.ac.cn organization: CAS Key Laboratory of Separation Sciences for Analytical Chemistry, National Chromatographic R&A Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China – sequence: 4 givenname: Hanfa surname: Zou fullname: Zou, Hanfa email: hanfazou@dicp.ac.cn organization: CAS Key Laboratory of Separation Sciences for Analytical Chemistry, National Chromatographic R&A Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China |
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| Keywords | Enrichment Post-translational modifications Protein glycosylation Protein phosphorylation Mass spectrometry Multi-dimensional liquid chromatography separation Trace analysis Multidimensional chromatography Tandem mass spectrometry Phosphorylation Chemical analysis Peptides Coupled method HPLC chromatography Glycosylation Review Protein Chemical enrichment Posttranslational modification Analysis method Peptide fragment Proteomics Large scale |
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| SubjectTerms | Acetylation Analytical chemistry Analytical, structural and metabolic biochemistry Biological and medical sciences Chemistry Chromatographic methods and physical methods associated with chromatography Enrichment Exact sciences and technology fractionation Fundamental and applied biological sciences. Psychology General aspects, investigation methods glycosylation Government regulations Liquid chromatography Mass spectrometry methylation Multi-dimensional liquid chromatography separation Other chromatographic methods oxidation peptides phosphorylation Post-translational modifications Protein glycosylation Protein phosphorylation Proteins proteome Proteomics Separation Strategy ubiquitination |
| Title | Enrichment and separation techniques for large-scale proteomics analysis of the protein post-translational modifications |
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