Discovery of small-molecule HIV-1 fusion and integrase inhibitors oleuropein and hydroxytyrosol: Part II. Integrase inhibition

• Published in: Biochemical and biophysical research communications Vol. 354; no. 4; pp. 879 - 884
• Main Authors: Lee-Huang, Sylvia, Huang, Philip Lin, Zhang, Dawei, Lee, Jae Wook, Bao, Ju, Sun, Yongtao, Chang, Young-Tae, Zhang, John, Huang, Paul Lee
• Format: Journal Article
• Language: English
• Published: United States Elsevier Inc 23.03.2007
• Subjects: 60 APPLIED LIFE SCIENCES; AIDS; AIDS VIRUS; AMINO ACIDS; Catalytic Domain; HIV Integrase - chemistry; HIV Integrase - metabolism; HIV Integrase Inhibitors - chemistry; HIV-1; HIV-1 integrase inhibitor; Human immunodeficiency virus 1; Hydroxytyrosol (HT); INHIBITION; Iridoids; LIGANDS; Models, Molecular; Molecular modeling; Natural product; Oleuropein (Ole); Olive leaf extract (OLE); Phenylethyl Alcohol - analogs & derivatives; Phenylethyl Alcohol - chemistry; Pyrans - chemistry; SIMULATION; Small molecule HIV-1 inhibitors; STRUCTURE FUNCTIONS; Structure-Activity Relationship; Structure–function; VAN DER WAALS FORCES; HIV-1; Hydroxytyrosol (HT); Structure–function; HIV-1 integrase inhibitor; Olive leaf extract (OLE); Small molecule HIV-1 inhibitors; Molecular modeling; Oleuropein (Ole); Natural product; AIDS
• ISSN: 0006-291X; 1090-2104
• DOI: 10.1016/j.bbrc.2007.01.058

We report molecular modeling and functional confirmation of Ole and HT binding to HIV-1 integrase. Docking simulations identified two binding regions for Ole within the integrase active site. Region I encompasses the conserved D64-D116-E152 motif, while region II involves the flexible loop region formed by amino acid residues 140–149. HT, on the other hand, binds to region II. Both Ole and HT exhibit favorable interactions with important amino acid residues through strong H-bonding and van der Waals contacts, predicting integrase inhibition. To test and confirm modeling predictions, we examined the effect of Ole and HT on HIV-1 integrase activities including 3′-processing, strand transfer, and disintegration. Ole and HT exhibit dose-dependent inhibition on all three activities, with EC50s in the nanomolar range. These studies demonstrate that molecular modeling of target–ligand interaction coupled with structural–activity analysis should facilitate the design and identification of innovative integrase inhibitors and other therapeutics.