Genes Encoding Calmodulin-binding Proteins in the Arabidopsis Genome
Analysis of the recently completed Arabidopsis genome sequence indicates that â¼31% of the predicted genes could not be assigned to functional categories, as they do not show any sequence similarity with proteins of known function from other organisms. Calmodulin (CaM), a ubiquitous and multifuncti...
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Published in | The Journal of biological chemistry Vol. 277; no. 12; pp. 9840 - 9852 |
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Main Authors | , , |
Format | Journal Article |
Language | English |
Published |
Legacy CDMS
American Society for Biochemistry and Molecular Biology
22.03.2002
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Subjects | |
Online Access | Get full text |
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Summary: | Analysis of the recently completed Arabidopsis genome sequence indicates that â¼31% of the predicted genes could not be assigned to functional categories, as they do not
show any sequence similarity with proteins of known function from other organisms. Calmodulin (CaM), a ubiquitous and multifunctional
Ca 2+ sensor, interacts with a wide variety of cellular proteins and modulates their activity/function in regulating diverse cellular
processes. However, the primary amino acid sequence of the CaM-binding domain in different CaM-binding proteins (CBPs) is
not conserved. One way to identify most of the CBPs in the Arabidopsis genome is by protein-protein interaction-based screening of expression libraries with CaM. Here, using a mixture of radiolabeled
CaM isoforms from Arabidopsis , we screened several expression libraries prepared from flower meristem, seedlings, or tissues treated with hormones, an
elicitor, or a pathogen. Sequence analysis of 77 positive clones that interact with CaM in a Ca 2+ -dependent manner revealed 20 CBPs, including 14 previously unknown CBPs. In addition, by searching the Arabidopsis genome sequence with the newly identified and known plant or animal CBPs, we identified a total of 27 CBPs. Among these,
16 CBPs are represented by families with 2â20 members in each family. Gene expression analysis revealed that CBPs and CBP
paralogs are expressed differentially. Our data suggest that Arabidopsis has a large number of CBPs including several plant-specific ones. Although CaM is highly conserved between plants and animals,
only a few CBPs are common to both plants and animals. Analysis of Arabidopsis CBPs revealed the presence of a variety of interesting domains. Our analyses identified several hypothetical proteins in
the Arabidopsis genome as CaM targets, suggesting their involvement in Ca 2+ -mediated signaling networks. |
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Bibliography: | CDMS Legacy CDMS ObjectType-Article-2 SourceType-Scholarly Journals-1 ObjectType-Feature-1 content type line 23 ObjectType-Article-1 ObjectType-Feature-2 |
ISSN: | 0021-9258 1083-351X |
DOI: | 10.1074/jbc.M111626200 |