Automated Analysis of Dynamic Ca2+ Signals in Image Sequences

Intracellular Ca(2+) signals are commonly studied with fluorescent Ca(2+) indicator dyes and microscopy techniques. However, quantitative analysis of Ca(2+) imaging data is time consuming and subject to bias. Automated signal analysis algorithms based on region of interest (ROI) detection have been...

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Bibliographic Details
Published inJournal of visualized experiments no. 88
Main Authors Francis, Michael, Waldrup, Josh, Qian, Xun, Taylor, Mark S.
Format Journal Article
LanguageEnglish
Published United States MyJove Corporation 16.06.2014
Subjects
Algorithms
Animals
automation
Basic Protocol
calcium
Calcium - analysis
Calcium - chemistry
Calcium - metabolism
calcium signaling
Calcium Signaling - physiology
computer software
dyes
Fluorescent Dyes - analysis
Fluorescent Dyes - chemistry
image analysis
microscopy
Microscopy, Fluorescence - methods
quantitative analysis
Signal Processing, Computer-Assisted
Software
statistical analysis
Swine
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Summary:Intracellular Ca(2+) signals are commonly studied with fluorescent Ca(2+) indicator dyes and microscopy techniques. However, quantitative analysis of Ca(2+) imaging data is time consuming and subject to bias. Automated signal analysis algorithms based on region of interest (ROI) detection have been implemented for one-dimensional line scan measurements, but there is no current algorithm which integrates optimized identification and analysis of ROIs in two-dimensional image sequences. Here an algorithm for rapid acquisition and analysis of ROIs in image sequences is described. It utilizes ellipses fit to noise filtered signals in order to determine optimal ROI placement, and computes Ca(2+) signal parameters of amplitude, duration and spatial spread. This algorithm was implemented as a freely available plugin for ImageJ (NIH) software. Together with analysis scripts written for the open source statistical processing software R, this approach provides a high-capacity pipeline for performing quick statistical analysis of experimental output. The authors suggest that use of this analysis protocol will lead to a more complete and unbiased characterization of physiologic Ca(2+) signaling.
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Correspondence to: Mark S. Taylor at mtaylor@southalabama.edu
ISSN:1940-087X
1940-087X
DOI:10.3791/51560