The Sleep Inbred Panel, a Collection of Inbred Drosophila melanogaster with Extreme Long and Short Sleep Duration

• Published in: G3 : genes - genomes - genetics Vol. 8; no. 9; pp. 2865 - 2873
• Main Authors: Serrano Negron, Yazmin L, Hansen, Nancy F, Harbison, Susan T
• Format: Journal Article
• Language: English
• Published: United States Genetics Society of America 01.09.2018; Oxford University Press
• Subjects: Animals; Drosophila melanogaster; Genome Report; Inbreeding; Polymorphism, Genetic; Sleep; whole-genome sequence; sleep; whole-genome sequence; Drosophila melanogaster
• ISSN: 2160-1836; 2160-1836
• DOI: 10.1534/g3.118.200503

Understanding how genomic variation causes differences in observable phenotypes remains a major challenge in biology. It is difficult to trace the sequence of events originating from genomic variants to changes in transcriptional responses or protein modifications. Ideally, one would conduct experiments with individuals that are at either extreme of the trait of interest, but such resources are often not available. Further, advances in genome editing will enable testing of candidate polymorphisms individually and in combination. Here we have created a resource for the study of sleep with 39 inbred lines of -the Sleep Inbred Panel (SIP). SIP lines have stable long- and short-sleeping phenotypes developed from naturally occurring polymorphisms. These lines are fully sequenced, enabling more accurate targeting for genome editing and transgenic constructs. This panel facilitates the study of intermediate transcriptional and proteomic correlates of sleep, and supports genome editing studies to verify polymorphisms associated with sleep duration.