Two Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree
Ggtree is a comprehensive R package for visualizing and annotating phylogenetic trees with associated data. It can also map and visualize associated external data on phylogenies with two general methods. Method 1 allows external data to be mapped on the tree structure and used as visual characterist...
Saved in:
Published in | Molecular biology and evolution Vol. 35; no. 12; pp. 3041 - 3043 |
---|---|
Main Authors | , , , |
Format | Journal Article |
Language | English |
Published |
United States
Oxford University Press
01.12.2018
|
Subjects | |
Online Access | Get full text |
Cover
Loading…
Summary: | Ggtree is a comprehensive R package for visualizing and annotating phylogenetic trees with associated data. It can also map and visualize associated external data on phylogenies with two general methods. Method 1 allows external data to be mapped on the tree structure and used as visual characteristic in tree and data visualization. Method 2 plots the data with the tree side by side using different geometric functions after reordering the data based on the tree structure. These two methods integrate data with phylogeny for further exploration and comparison in the evolutionary biology context. Ggtree is available from http://www.bioconductor.org/packages/ggtree. |
---|---|
Bibliography: | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
ISSN: | 0737-4038 1537-1719 |
DOI: | 10.1093/molbev/msy194 |