Prognostic Value of GIMAP4 and Its Role in Promoting Immune Cell Infiltration into Tumor Microenvironment of Lung Adenocarcinoma

• Published in: BioMed research international Vol. 2022; pp. 1 - 21
• Main Authors: Chen, Siyuan, Tian, Dong, Petersen, Lauren, Cao, Shuchang, Quinn, Zachary, Kan, Junyan, Zheng, Mingfeng, Mao, Wenjun, Wan, Yuan
• Format: Journal Article
• Language: English
• Published: New York Hindawi 06.10.2022; John Wiley & Sons, Inc; Hindawi Limited
• Subjects: Adenocarcinoma; Biological activity; Biomarkers; Breast cancer; Cancer; Carcinogenesis; Carcinogens; Datasets; Development and progression; Encyclopedias; Gene expression; Genetic aspects; Genomes; Immune system; Immunotherapy; Infiltration; Kinases; Lung cancer; Lung cancer, Non-small cell; Medical prognosis; Metastases; Mutation; Non-small cell lung carcinoma; Oncology, Experimental; Prognosis; Small cell lung carcinoma; Software packages; Statistical significance; Survival analysis; Tumor microenvironment; Tumor-infiltrating lymphocytes; Tumors; Wound healing; China
• ISSN: 2314-6133; 2314-6141
• DOI: 10.1155/2022/7440189

GIMAPs are recognized as an important regulator in the carcinogenesis and development of lung cancer, but the function of GIMAP4 in the tumor microenvironment (TME) of lung cancers is unclear. In this study, we investigated the expression and variation of GIMAP4 in lung adenocarcinoma (LUAD), to explore its association with infiltration of immune cells. The Cancer Genome Atlas (TCGA) data and Gene Expression Omnibus (GEO) data were analyzed. Infiltration of immune cells was identified with TIMER (Tumor Immune Estimation Resource) and TISIDB (an integrated repository portal for tumor-immune system interactions). GIMAP4 expression declined in non-small-cell lung cancer (NSCLC), correlated with a poor overall survival (OS) in LUAD, indicating that GIMAP4 was a promising prognostic biomarker in LUAD. GIMAP4 mutation frequency was 1.76% in TCGA cohort and was relevant to the expression of immune components. TIMER and CIBERSORT analysis further confirmed that high GIMAP4 expression possibly promoted immune cell infiltration into the TME, with low GIMAP4 impairing the efficacy of immunotherapies targeting common immune check point inhibitors (ICI). GO (Gene Ontology) and KEGG (Kyoto Encyclopedia of Genes and Genomes) analyses were performed to provide insights into biological processes involved in LUAD. GIMAP4 was expected to be a prognostic biomarker in LUAD and provides potential adjuvant or neoadjuvant therapeutic strategies for targeting ICIs.