Species tree phylogeny and character evolution in the genus Centipeda (Asteraceae): Evidence from DNA sequences from coding and non-coding loci from the plastid and nuclear genomes

• Published in: Molecular phylogenetics and evolution Vol. 68; no. 2; pp. 239 - 250
• Main Authors: Nylinder, Stephan, Cronholm, Bodil, de Lange, Peter J., Walsh, Neville, Anderberg, Arne A.
• Format: Journal Article
• Language: English
• Published: United States Elsevier Inc 01.08.2013
• Subjects: Achillea ptarmica; Asteraceae; Asteraceae - classification; Asteraceae - genetics; Asteraceae - growth & development; Athroismeae; Australia; Bayes Theorem; biogeography; Centipeda; cotton; Craters; Deoxyribonucleic acid; Deserts; Evolution; Evolution, Molecular; Genes, Plant; genome; Genome, Plant; Genome, Plastid; Genomes; internal transcribed spacers; Loci; Models, Genetic; Morphological evolution; Multilocus Sequence Typing; New Zealand; Phylogeny; plasmids; ribosomal DNA; Sequence Alignment; shoots; Species tree; topology; Trees; Weeds; New Zealand; New Zealand; Centipeda; Athroismeae; Australia; Species tree; Morphological evolution
• ISSN: 1055-7903; 1095-9513
• DOI: 10.1016/j.ympev.2013.03.020

•Centipeda is a plant genus of 10 species showing little morphological variation.•We analyse the data under a multi-locus multi-species evolutionary model.•Gene trees are insufficient sources of information for species relationships.•Morphological evolution makes sense in light of species tree. A species tree phylogeny of the Australian/New Zealand genus Centipeda (Asteraceae) is estimated based on nucleotide sequence data. We analysed sequences of nuclear ribosomal DNA (ETS, ITS) and three plasmid loci (ndhF, psbA-trnH, and trnL-F) using the multi-species coalescent module in BEAST. A total of 129 individuals from all 10 recognised species of Centipeda were sampled throughout the species distribution ranges, including two subspecies. We conclude that the inferred species tree topology largely conform previous assumptions on species relationships. Centipeda racemosa (Snuffweed) is the sister to remaining species, which is also the only consistently perennial representative in the genus. Centipeda pleiocephala (Tall Sneezeweed) and C. nidiformis (Cotton Sneezeweed) constitute a species pair, as does C. borealis and C. minima (Spreading Sneezeweed), all sharing the symplesiomorphic characters of spherical capitulum and convex receptacle with C. racemosa. Another species group comprising C. thespidioides (Desert Sneezeweed), C. cunninghamii (Old man weed, or Common sneeze-weed), C. crateriformis is well-supported but then include the morphologically aberrant C. aotearoana, all sharing the character of having capitula that mature more slowly relative the subtending shoot. Centipeda elatinoides takes on a weakly supported intermediate position between the two mentioned groups, and is difficult to relate to any of the former groups based on morphological characters.