Curating genomic disease-gene relationships with Gene2Phenotype (G2P)

Genetically determined disorders are highly heterogenous in clinical presentation and underlying molecular mechanism. The evidence underpinning these conditions in the peer-reviewed literature requires robust critical evaluation for diagnostic use. Here, we present a structured curation process for...

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Published inGenome medicine Vol. 16; no. 1; pp. 127 - 8
Main Authors Yates, T Michael, Ansari, Morad, Thompson, Louise, Hunt, Sarah E, Uhalte, Elena Cibrian, Hobson, Rachel J, Marsh, Joseph A, Wright, Caroline F, Firth, Helen V
Format Journal Article
LanguageEnglish
Published England BioMed Central Ltd 06.11.2024
BioMed Central
BMC
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Summary:Genetically determined disorders are highly heterogenous in clinical presentation and underlying molecular mechanism. The evidence underpinning these conditions in the peer-reviewed literature requires robust critical evaluation for diagnostic use. Here, we present a structured curation process for Gene2Phenotype (G2P). This draws on multiple lines of clinical, bioinformatic and functional evidence. The process utilises and extends existing terminologies, allows for precise definition of the molecular basis of disease, and confidence levels to be attributed to a given gene-disease assertion. In-depth disease curation using this process will prove useful in applications including in diagnostics, research and development of targeted therapeutics. G2P: www.ebi.ac.uk/gene2phenotype .
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ISSN:1756-994X
1756-994X
DOI:10.1186/s13073-024-01398-1