Unexpected diversity displayed in cDNAs expressed by the immune cells of the purple sea urchin, Strongylocentrotus purpuratus

• Published in: Physiological genomics Vol. 26; no. 2; pp. 134 - 144
• Main Authors: Terwilliger, David P, Buckley, Katherine M, Mehta, Dhruti, Moorjani, Priya G, Smith, L.Courtney
• Format: Journal Article
• Language: English
• Published: United States Am Physiological Soc 12.07.2006
• Subjects: Amino Acid Motifs; Animals; Base Sequence; Computational Biology; DNA Primers - chemistry; DNA, Complementary - metabolism; Echinoidea; Expressed Sequence Tags; Genetic Variation; Immune System; Immunity, Innate; Models, Statistical; Molecular Sequence Data; Polymerase Chain Reaction; Protein Structure, Tertiary; Sequence Homology, Nucleic Acid; Strongylocentrotus purpuratus; Strongylocentrotus purpuratus - genetics; Strongylocentrotus purpuratus - immunology
• ISSN: 1094-8341; 1531-2267
• DOI: 10.1152/physiolgenomics.00011.2006

1 Department of Biological Sciences, George Washington University, Washington, District of Columbia 2 Howard University College of Medicine, George Washington University, Washington, District of Columbia 3 Program in Genomics and Bioinformatics, George Washington University, Washington, District of Columbia We recently identified a unique family of transcripts, the 185/333 family, that comprise 60% of the mRNAs induced by coelomocytes from the purple sea urchin in response to immunological challenge from lipopolysaccharide. An analysis of 81 full-length cDNAs revealed 67 unique nucleotide sequences encoding 64 different proteins. Diversity of the transcripts was based on 25 sequence blocks, or "elements," which resulted in 22 different element patterns based on their presence or absence. Furthermore, there was a high level of nucleotide variation within elements, including single nucleotide polymorphisms and insertions/deletions, both of which resulted in amino acid sequence variability. The deduced 185/333 proteins contained an NH 2 -terminal leader, a glycine-rich region with an RGD motif, a histidine-rich region, and a COOH-terminal region. Two 185/333 genes, identified in the partially assembled Strongylocentrotus purpuratus genome, have two exons. The first encoded the leader, and the second encoded the remainder of the predicted protein. Estimates from quantitative PCR indicated that there were 100 alleles in the diploid genome. These results suggested that the purple sea urchin may have mechanisms for generating high levels of diversity in response to immunological challenge that have not been considered previously. coelomocytes; innate immunity; echinoderm