Common genetic variations in telomere length genes and lung cancer: a Mendelian randomisation study and its novel application in lung tumour transcriptome

• Published in: eLife Vol. 12
• Main Authors: Cortez Cardoso Penha, Ricardo, Smith-Byrne, Karl, Atkins, Joshua R, Haycock, Philip C, Kar, Siddhartha, Codd, Veryan, Samani, Nilesh J, Nelson, Christopher, Milojevic, Maja, Gabriel, Aurélie A G, Amos, Christopher, Brennan, Paul, Hung, Rayjean J, Kachuri, Linda, Mckay, James D
• Format: Journal Article
• Language: English
• Published: England eLife Sciences Publications, Ltd 20.04.2023; eLife Sciences Publications Ltd
• Subjects: Adenocarcinoma of Lung - genetics; Adenocarcinoma of Lung - metabolism; Epidemiology and Global Health; Female; gene expression; Genetic Variation; Genome Stability; Genome-Wide Association Study; GWAS; Humans; Leukocytes - metabolism; lung cancer; Lung Neoplasms - genetics; Lung Neoplasms - metabolism; Male; Mendelian randomisation; Risk Factors; RNA Splicing Factors - metabolism; Telomere - genetics; Telomere - metabolism; telomere length; Transcription Factors - metabolism; Transcriptome; global health; lung cancer; epidemiology; GWAS; Genome Stability; human; Mendelian randomisation; gene expression; telomere length
• ISSN: 2050-084X; 2050-084X
• DOI: 10.7554/eLife.83118

Genome-wide association studies (GWASs) have identified genetic susceptibility variants for both leukocyte telomere length (LTL) and lung cancer susceptibility. Our study aims to explore the shared genetic basis between these traits and investigate their impact on somatic environment of lung tumours. We performed genetic correlation, Mendelian randomisation (MR), and colocalisation analyses using the largest available GWASs summary statistics of LTL (N=464,716) and lung cancer (N=29,239 cases and 56,450 controls). Principal components analysis based on RNA-sequencing data was used to summarise gene expression profile in lung adenocarcinoma cases from TCGA (N=343). Although there was no genome-wide genetic correlation between LTL and lung cancer risk, longer LTL conferred an increased risk of lung cancer regardless of smoking status in the MR analyses, particularly for lung adenocarcinoma. Of the 144 LTL genetic instruments, 12 colocalised with lung adenocarcinoma risk and revealed novel susceptibility loci, including , , and . The polygenic risk score for LTL was associated with a specific gene expression profile (PC2) in lung adenocarcinoma tumours. The aspect of PC2 associated with longer LTL was also associated with being female, never smokers, and earlier tumour stages. PC2 was strongly associated with cell proliferation score and genomic features related to genome stability, including copy number changes and telomerase activity. This study identified an association between longer genetically predicted LTL and lung cancer and sheds light on the potential molecular mechanisms related to LTL in lung adenocarcinomas. Institut National du Cancer (GeniLuc2017-1-TABAC-03-CIRC-1-TABAC17-022), INTEGRAL/NIH (5U19CA203654-03), CRUK (C18281/A29019), and Agence Nationale pour la Recherche (ANR-10-INBS-09).