Tuning Structure and Dynamics of Blue Copper Azurin Junctions via Single Amino-Acid Mutations

• Published in: Biomolecules (Basel, Switzerland) Vol. 9; no. 10; p. 611
• Main Authors: Ortega, Maria, Vilhena, J G, Zotti, Linda A, Díez-Pérez, Ismael, Cuevas, Juan Carlos, Pérez, Rubén
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI 15.10.2019; MDPI AG
• Subjects: azurin; biomolecular electronics; electronic transport; molecular dynamics; protein adsorption; single molecule; single-point-mutation; solid-state junction; single molecule; protein adsorption; solid-state junction; Azurin; single-point-mutation; electronic transport; molecular dynamics; biomolecular electronics
• ISSN: 2218-273X; 2218-273X
• DOI: 10.3390/biom9100611

In the growing field of biomolecular electronics, blue-copper Azurin stands out as one of the most widely studied protein in single-molecule contacts. Interestingly, despite the paramount importance of the structure/dynamics of molecular contacts in their transport properties, these factors remain largely unexplored from the theoretical point of view in the context of single Azurin junctions. Here we address this issue using all-atom Molecular Dynamics (MD) of Pseudomonas Aeruginosa Azurin adsorbed to a Au(111) substrate. In particular, we focus on the structure and dynamics of the free/adsorbed protein and how these properties are altered upon single-point mutations. The results revealed that wild-type Azurin adsorbs on Au(111) along two well defined configurations: one tethered via cysteine groups and the other via the hydrophobic pocket surrounding the Cu 2 + . Surprisingly, our simulations revealed that single amino-acid mutations gave rise to a quenching of protein vibrations ultimately resulting in its overall stiffening. Given the role of amino-acid vibrations and reorientation in the dehydration process at the protein-water-substrate interface, we suggest that this might have an effect on the adsorption process of the mutant, giving rise to new adsorption configurations.