Effects of 5‐year experimental warming in the Alpine belt on soil Archaea: Multi‐omics approaches and prospects

• Published in: Environmental microbiology reports Vol. 15; no. 4; pp. 291 - 297
• Main Authors: D'Alò, Federica, Zucconi, Laura, Onofri, Silvano, Canini, Fabiana, Cannone, Nicoletta, Malfasi, Francesco, Morais, Daniel Kumazawa, Starke, Robert
• Format: Journal Article
• Language: English
• Published: Hoboken, USA John Wiley & Sons, Inc 01.08.2023; Wiley
• Subjects: Abundance; Archaea; Archaea - genetics; Biosynthesis; Brief Report; Brief Reports; Carbon; Climate Change; Climate prediction; Ecosystems; Genes; Genomes; Genomics; Grasslands; Italy; Metabolism; Metagenomics; Micronutrients; Moisture content; Multiomics; Nucleotides; Proteins; Soil - chemistry; Soil Microbiology; Soil structure; Soil water; Structure-function relationships; Taxonomy; Temperature; Water content; Italy
• ISSN: 1758-2229; 1758-2229
• DOI: 10.1111/1758-2229.13152

We currently lack a predictive understanding of how soil archaeal communities may respond to climate change, particularly in Alpine areas where warming is far exceeding the global average. Here, we characterized the abundance, structure, and function of total (by metagenomics) and active soil archaea (by metatranscriptomics) after 5‐year experimental field warming (+1°C) in Italian Alpine grasslands and snowbeds. Our multi‐omics approach unveiled an increasing abundance of Archaea during warming in snowbeds, which was negatively correlated with the abundance of fungi (by qPCR) and micronutrients (Ca and Mg), but positively correlated with soil water content. In the snowbeds transcripts, warming resulted in the enrichment of abundances of transcription and nucleotide biosynthesis. Our study provides novel insights into possible changes in soil Archaea composition and function in the climate change scenario.