Saccharina genomes provide novel insight into kelp biology

• Published in: Nature communications Vol. 6; no. 1; p. 6986
• Main Authors: Ye, Naihao, Zhang, Xiaowen, Miao, Miao, Fan, Xiao, Zheng, Yi, Xu, Dong, Wang, Jinfeng, Zhou, Lin, Wang, Dongsheng, Gao, Yuan, Wang, Yitao, Shi, Wenyu, Ji, Peifeng, Li, Demao, Guan, Zheng, Shao, Changwei, Zhuang, Zhimeng, Gao, Zhengquan, Qi, Ji, Zhao, Fangqing
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 24.04.2015; Nature Publishing Group; Nature Pub. Group
• Subjects: 631/208/212; 631/208/2491; 631/208/457; Adaptation, Biological; Biological Evolution; Carbohydrate Metabolism - genetics; Genome; Genomics; Humanities and Social Sciences; Iodide Peroxidase - metabolism; Iodine - metabolism; Kelp - genetics; Kelp - metabolism; Molecular Sequence Annotation; Molecular Sequence Data; multidisciplinary; Multigene Family; Science; Science (multidisciplinary)
• ISSN: 2041-1723; 2041-1723
• DOI: 10.1038/ncomms7986

Seaweeds are essential for marine ecosystems and have immense economic value. Here we present a comprehensive analysis of the draft genome of Saccharina japonica , one of the most economically important seaweeds. The 537-Mb assembled genomic sequence covered 98.5% of the estimated genome, and 18,733 protein-coding genes are predicted and annotated. Gene families related to cell wall synthesis, halogen concentration, development and defence systems were expanded. Functional diversification of the mannuronan C-5-epimerase and haloperoxidase gene families provides insight into the evolutionary adaptation of polysaccharide biosynthesis and iodine antioxidation. Additional sequencing of seven cultivars and nine wild individuals reveal that the genetic diversity within wild populations is greater than among cultivars. All of the cultivars are descendants of a wild S. japonica accession showing limited admixture with S. longissima . This study represents an important advance toward improving yields and economic traits in Saccharina and provides an invaluable resource for plant genome studies. Kelps are ecologically and economically important seaweeds. Here the authors sequence the genome of Saccharina japonica to gain insights into the evolutionary adaptation of polysaccharide biosynthesis, iodine concentration and antioxidation mechanisms and the population genetics of kelp domestication.