A holistic view of polyhydroxyalkanoate metabolism in Pseudomonas putida

Summary Polyhydroxyalkanoate (PHA) metabolism has been traditionally considered as a futile cycle involved in carbon and energy storage. The use of cutting‐edge technologies linked to systems biology has improved our understanding of the interaction between bacterial physiology, PHA metabolism and o...

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Published inEnvironmental microbiology Vol. 18; no. 2; pp. 341 - 357
Main Authors Prieto, Auxiliadora, Escapa, Isabel F., Martínez, Virginia, Dinjaski, Nina, Herencias, Cristina, de la Peña, Fernando, Tarazona, Natalia, Revelles, Olga
Format Journal Article
LanguageEnglish
Published England Blackwell Publishing Ltd 01.02.2016
Wiley Subscription Services, Inc
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Summary:Summary Polyhydroxyalkanoate (PHA) metabolism has been traditionally considered as a futile cycle involved in carbon and energy storage. The use of cutting‐edge technologies linked to systems biology has improved our understanding of the interaction between bacterial physiology, PHA metabolism and other cell functions in model bacteria such as Pseudomonas putida KT2440. PHA granules or carbonosomes are supramolecular complexes of biopolyester and proteins that are essential for granule segregation during cell division, and for the functioning of the PHA metabolic route as a continuous cycle. The simultaneous activities of PHA synthase and depolymerase ensure the carbon flow to the transient demand for metabolic intermediates to balance the storage and use of carbon and energy. PHA cycle also determines the number and size of bacterial cells. The importance of PHAs as nutrients for members of the microbial community different to those that produce them is illustrated here via examples of bacterial predators such as Bdellovibrio bacteriovorus that prey on PHA producers and produces specific extra‐cellular depolymerases. PHA hydrolysis confers Bdellovibrio ecological advantages in terms of motility and predation efficiency, demonstrating the importance of PHA producers predation in population dynamics. Metabolic modulation strategies for broadening the portfolio of PHAs are summarized and their properties are compiled.
Bibliography:istex:551AC6C6CA502C0108FC513C826E42FA40142BA1
Table S1. Effect of the inactivation of gacS gene on the transcriptome of Pseudomonas putida KT2442. Data were obtained using DNA microarrays. Fold change corresponds to the mean fold upregulation (positive values) and to the mean fold downregulation (negative values) of gene expression in P. putida KT42GacS (gacS of KT2442 versus strain KT2442). The FDR values indicate the adjusted P-value for multiple testing to control the false discovery rate (see Experimental procedures). Only ORFs with significant difference are shown (FDR ≥ 0.05; FC ≥ 2 or FC ≤ -2).
Ministerio of Economía y Competitividad, España - No. BIO2010-21049; No. BIO2013-44878-R; No. 201120E092; No. 201120E050
ark:/67375/WNG-NKZBXH59-8
Department of Science Technology and Innovation-Colciencias, Colombia
ArticleID:EMI12760
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ISSN:1462-2912
1462-2920
DOI:10.1111/1462-2920.12760