E-photosynthesis: Web-based platform for modeling of complex photosynthetic processes

E-photosynthesis framework is a web-based platform for modeling and analysis of photosynthetic processes. Compared to its earlier version, the present platform employs advanced software methods and technologies to support an effective implementation of vastly diverse kinetic models of photosynthesis...

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Bibliographic Details
Published inBioSystems Vol. 103; no. 2; pp. 115 - 124
Main Authors Šafránek, David, Červený, Jan, Klement, Matěj, Pospíšilová, Jana, Brim, Luboš, Lazár, Dušan, Nedbal, Ladislav
Format Journal Article
LanguageEnglish
Published Ireland Elsevier Ireland Ltd 01.02.2011
Subjects
Biomodels repository
Computational Biology - methods
Computational models
Computer Simulation
Internet
Kinetics
Models, Biological
Photosynthesis
Photosynthesis - physiology
Software
Systems biology
Systems Biology - methods
Web platform
ODE
SED-ML
Computational models
Systems biology
MIASE
SBML
Photosynthesis
SOAP
Web platform
Biomodels repository
MIRIAM
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Summary:E-photosynthesis framework is a web-based platform for modeling and analysis of photosynthetic processes. Compared to its earlier version, the present platform employs advanced software methods and technologies to support an effective implementation of vastly diverse kinetic models of photosynthesis. We report on the first phase implementation of the tool new version and demonstrate the functionalities of model visualization, presentation of model components, rate constants, initial conditions and of model annotation. The demonstration also includes export of a model to the Systems Biology Markup Language format and remote numerical simulation of the model.
Bibliography:ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
ISSN:0303-2647
1872-8324
DOI:10.1016/j.biosystems.2010.10.013