Genetic Variability and Phylogenetic Analysis of Han Population from Guanzhong Region of China based on 21 non-CODIS STR Loci

• Published in: Scientific reports Vol. 5; no. 1; p. 8872
• Main Authors: Zhang, Yu-Dang, Tang, Xiao-Li, Meng, Hao-Tian, Wang, Hong-Dan, Jin, Rui, Yang, Chun-Hua, Yan, Jiang-Wei, Yang, Guang, Liu, Wen-Juan, Shen, Chun-Mei, Zhu, Bo-Feng
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 09.03.2015; Nature Publishing Group
• Subjects: 631/181; 631/208; China - epidemiology; China - ethnology; Chromosome Mapping - methods; Databases, Genetic; Forensic science; Gene Frequency - genetics; Gene loci; Genetic distance; Genetic variability; Genetic Variation - genetics; Genetics, Population; Humanities and Social Sciences; Humans; Microsatellite Repeats - genetics; multidisciplinary; Phylogenetics; Phylogeny; Population; Population genetics; Population studies; Quantitative Trait Loci - genetics; Science; China
• ISSN: 2045-2322; 2045-2322
• DOI: 10.1038/srep08872

In the present study, we presented the population genetic data and their forensic parameters of 21 non-CODIS autosomal STR loci in Chinese Guanzhong Han population. A total of 166 alleles were observed with corresponding allelic frequencies ranging from 0.0018 to 0.5564. No STR locus was observed to deviate from the Hardy-Weinberg equilibrium and linkage disequilibriums after applying Bonferroni correction. The cumulative power of discrimination and probability of exclusion of all the 21 STR loci were 0.99999999999999999993814 and 0.999998184, respectively. The results of genetic distances, phylogenetic trees and principal component analysis revealed that the Guanzhong Han population had a closer relationship with Ningxia Han, Tujia and Bai groups than other populations tested. In summary, these 21 STR loci showed a high level of genetic polymorphisms for the Guanzhong Han population and could be used for forensic applications and the studies of population genetics.