Calculation of Crystal-Solution Dissociation Constants

• Published in: Biomolecules (Basel, Switzerland) Vol. 12; no. 2; p. 147
• Main Authors: Garbuzynskiy, Sergiy O, Finkelstein, Alexei V
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 18.01.2022; MDPI
• Subjects: amplitude of movements in crystals; binding entropy; Binding sites; Chemical bonds; computational chemistry and biochemistry; Crystals; dissociation constant; Dissolution; Energy; Entropy; Equilibrium; Free energy; Henry’s law constant; Ligands; molecular crystals; Molecular Dynamics Simulation; Solvents; Thermodynamics; Vapors; amplitude of movements in crystals; binding entropy; computational chemistry and biochemistry; dissociation constant; molecular crystals; Henry’s law constant
• ISSN: 2218-273X; 2218-273X
• DOI: 10.3390/biom12020147

The calculation of dissociation constants is an important problem in molecular biophysics. For such a calculation, it is important to correctly calculate both terms of the binding free energy; that is, the enthalpy and entropy of binding. Both these terms can be computed using molecular dynamics simulations, but this approach is very computationally expensive, and entropy calculations are especially slow. We develop an alternative very fast method of calculating the binding entropy and dissociation constants. The main part of our approach is based on the evaluation of movement ranges of molecules in the bound state. Then, the range of molecular movements in the bound state (here, in molecular crystals) is used for the calculation of the binding entropies and, then (using, in addition, the experimentally measured sublimation enthalpies), the crystal-to-vapor dissociation constants. Previously, we considered the process of the reversible sublimation of small organic molecules from crystals to vapor. In this work, we extend our approach by considering the dissolution of molecules, in addition to their sublimation. Similar to the sublimation case, our method shows a good correlation with experimentally measured dissociation constants at the dissolution of crystals.