Genomes OnLine database (GOLD) v.7: updates and new features

• Published in: Nucleic acids research Vol. 47; no. D1; pp. D649 - D659
• Main Authors: Mukherjee, Supratim, Stamatis, Dimitri, Bertsch, Jon, Ovchinnikova, Galina, Katta, Hema Y, Mojica, Alejandro, Chen, I-Min A, Kyrpides, Nikos C, Reddy, TBK
• Format: Journal Article
• Language: English
• Published: England Oxford University Press 08.01.2019
• Subjects: 60 APPLIED LIFE SCIENCES; BASIC BIOLOGICAL SCIENCES; Database Issue; Databases, Genetic - standards; Gene Ontology; Genomics - methods; MATHEMATICS AND COMPUTING; Software - standards
• ISSN: 0305-1048; 1362-4962
• DOI: 10.1093/nar/gky977

Abstract The Genomes Online Database (GOLD) (https://gold.jgi.doe.gov) is an open online resource, which maintains an up-to-date catalog of genome and metagenome projects in the context of a comprehensive list of associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project. Currently GOLD hosts information on 33 415 Studies, 49 826 Biosamples, 313 324 Organisms, 215 881 Sequencing Projects and 174 454 Analysis Projects with a total of 541 metadata fields, of which 80 are based on controlled vocabulary (CV) terms. GOLD provides a user-friendly web interface to browse sequencing projects and launch advanced search tools across four classification levels. Users submit metadata on a wide range of Sequencing and Analysis Projects in GOLD before depositing sequence data to the Integrated Microbial Genomes (IMG) system for analysis. GOLD conforms with and supports the rules set by the Genomic Standards Consortium (GSC) Minimum Information standards. The current version of GOLD (v.7) has seen the number of projects and associated metadata increase exponentially over the years. This paper provides an update on the current status of GOLD and highlights the new features added over the last two years.