Investigation of a side‐chain‐side‐chain hydrogen bond by mutagenesis, thermodynamics, and NMR spectroscopy

• Published in: Protein science Vol. 4; no. 5; pp. 936 - 944
• Main Authors: Hammen, Philip K., Klevit, Rachel E., Martin Scholtz, J., William Anderson, J., Bruce Waygood, E.
• Format: Journal Article
• Language: English
• Published: Bristol Cold Spring Harbor Laboratory Press 01.05.1995
• Subjects: Bacterial Proteins - chemistry; Bacterial Proteins - metabolism; Base Sequence; conformational free energy; Enzyme Stability; Escherichia coli; hydrogen bond; Hydrogen Bonding; Magnetic Resonance Spectroscopy; Models, Molecular; Molecular Sequence Data; Mutagenesis; NMR; Phosphoenolpyruvate Sugar Phosphotransferase System - chemistry; Phosphoenolpyruvate Sugar Phosphotransferase System - metabolism; Protein Conformation; Protein Denaturation; protein stability; protein structure; Protein Structure, Secondary; Serine - genetics; Staphylococcus aureus; Thermodynamics; Urea
• ISSN: 0961-8368; 1469-896X
• DOI: 10.1002/pro.5560040513

Anomalous NMR behavior of the hydroxyl proton resonance for Ser 31 has been reported for histidine‐containing protein (HPr) from two microorganisms: Escherichia coli and Staphylococcus aureus. The unusual slow exchange and chemical shift exhibited by the resonance led to the proposal that the hydroxyl group is involved in a strong hydrogen bond. To test this hypothesis and to characterize the importance of such an interaction, a mutant in which Ser 31 is replaced by an alanine was generated in HPr from Escherichia coli. The activity, stability, and structure of the mutant HPr were assessed using a reconstituted assay system, analysis of solvent denaturation curves, and NMR, respectively. Substitution of Ser 31 yields a fully functional protein that is only slightly less stable (ΔΔGfolding = 0.46 ± 0.15 kcal mor−1) than the wild type. The NMR results confirm the identity of the hydrogen bond acceptor as Asp 69 and reveal that it exists as the gauche− conformer in wild‐type HPr in solution but exhibits conformational averaging in the mutant protein. The side chain of Asp 69 interacts with two main‐chain amide protons in addition to its interaction with the side chain of Ser 31 in the wild‐type protein. These results indicate that removal of the serine has led to the loss of all three hydrogen bond interactions involving Asp 69, suggesting a cooperative network of interactions. A complete analysis of the thermodynamics was performed in which differences in side‐chain hydrophobicity and conformational entropy between the two proteins are accounted for. This analysis, performed in the context of information afforded by the NMR studies, indicates that this network of interactions contributes ca. 4–5 kcal mol−1 to the conformational free energy of wild‐type HPr.