Machine Learning-Based Etiologic Subtyping of Ischemic Stroke Using Circulating Exosomal microRNAs

• Published in: International journal of molecular sciences Vol. 25; no. 12; p. 6761
• Main Authors: Bang, Ji Hoon, Kim, Eun Hee, Kim, Hyung Jun, Chung, Jong-Won, Seo, Woo-Keun, Kim, Gyeong-Moon, Lee, Dong-Ho, Kim, Heewon, Bang, Oh Young
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 20.06.2024; MDPI
• Subjects: Accuracy; Aged; Algorithms; Atherosclerosis; Biomarkers - blood; Circulating MicroRNA - blood; Circulating MicroRNA - genetics; Computational Biology - methods; etiology; Exosomes - genetics; Exosomes - metabolism; extracellular vesicle; Extracellular vesicles; Extracellular Vesicles - genetics; Extracellular Vesicles - metabolism; Feature selection; Female; Gene Expression Profiling - methods; Genes; Growth factors; Health aspects; High-Throughput Nucleotide Sequencing - methods; Humans; Ischemia; ischemic stroke; Ischemic Stroke - blood; Ischemic Stroke - diagnosis; Ischemic Stroke - genetics; Kinases; Machine Learning; Male; MicroRNA; MicroRNAs; MicroRNAs - blood; MicroRNAs - genetics; Middle Aged; Regression analysis; Stroke; subtype; Veins & arteries; South Korea; microRNAs; machine learning; subtype; extracellular vesicle; ischemic stroke; etiology
• ISSN: 1422-0067; 1661-6596; 1422-0067
• DOI: 10.3390/ijms25126761

Ischemic stroke is a major cause of mortality worldwide. Proper etiological subtyping of ischemic stroke is crucial for tailoring treatment strategies. This study explored the utility of circulating microRNAs encapsulated in extracellular vesicles (EV-miRNAs) to distinguish the following ischemic stroke subtypes: large artery atherosclerosis (LAA), cardioembolic stroke (CES), and small artery occlusion (SAO). Using next-generation sequencing (NGS) and machine-learning techniques, we identified differentially expressed miRNAs (DEMs) associated with each subtype. Through patient selection and diagnostic evaluation, a cohort of 70 patients with acute ischemic stroke was classified: 24 in the LAA group, 24 in the SAO group, and 22 in the CES group. Our findings revealed distinct EV-miRNA profiles among the groups, suggesting their potential as diagnostic markers. Machine-learning models, particularly logistic regression models, exhibited a high diagnostic accuracy of 92% for subtype discrimination. The collective influence of multiple miRNAs was more crucial than that of individual miRNAs. Additionally, bioinformatics analyses have elucidated the functional implications of DEMs in stroke pathophysiology, offering insights into the underlying mechanisms. Despite limitations like sample size constraints and retrospective design, our study underscores the promise of EV-miRNAs coupled with machine learning for ischemic stroke subtype classification. Further investigations are warranted to validate the clinical utility of the identified EV-miRNA biomarkers in stroke patients.