Probing Membrane Association of α-Synuclein Domains with VDAC Nanopore Reveals Unexpected Binding Pattern

• Published in: Scientific reports Vol. 9; no. 1; p. 4580
• Main Authors: Jacobs, Daniel, Hoogerheide, David P, Rovini, Amandine, Jiang, Zhiping, Lee, Jennifer C, Rostovtseva, Tatiana K, Bezrukov, Sergey M
• Format: Journal Article
• Language: English
• Published: England Nature Publishing Group 14.03.2019; Nature Publishing Group UK
• Subjects: Algorithms; alpha-Synuclein - chemistry; alpha-Synuclein - metabolism; Animals; Cell Membrane - metabolism; Hydrophobicity; Lipid Bilayers - chemistry; Lipid Bilayers - metabolism; Lipids; Membrane composition; Membrane Lipids - chemistry; Membrane Lipids - metabolism; Mice; Mitochondria; Mitochondrial Membranes - metabolism; Models, Biological; Nanopores; Outer membranes; Plants; Protein Binding; Protein Interaction Domains and Motifs; Synuclein; Voltage; Voltage-Dependent Anion Channels - chemistry; Voltage-Dependent Anion Channels - metabolism
• ISSN: 2045-2322; 2045-2322
• DOI: 10.1038/s41598-019-40979-8

It is well established that α-synuclein (α-syn) binding from solution to the surface of membranes composed of negatively charged and/or non-lamellar lipids can be characterized by equilibrium dissociation constants of tens of micromolar. Previously, we have found that a naturally occurring nanopore of the mitochondrial voltage-dependent anion channel (VDAC), reconstituted into planar bilayers of a plant-derived lipid, responds to α-syn at nanomolar solution concentrations. Here, using lipid mixtures that mimic the composition of mitochondrial outer membranes, we show that functionally important binding does indeed take place in the nanomolar range. We demonstrate that the voltage-dependent rate at which a membrane-embedded VDAC nanopore captures α-syn is a strong function of membrane composition. Comparison of the nanopore results with those obtained by the bilayer overtone analysis of membrane binding demonstrates a pronounced correlation between the two datasets. The stronger the binding, the larger the on-rate, but with some notable exceptions. This leads to a tentative model of α-syn-membrane interactions, which assigns different lipid-dependent roles to the N- and C-terminal domains of α-syn accounting for both electrostatic and hydrophobic effects. As a result, the rate of α-syn capture by the nanopore is not simply proportional to the α-syn concentration on the membrane surface but found to be sensitive to the specific interactions of each domain with the membrane and nanopore.