Polymorphism and nucleotide sequencing of BMPR1B gene in prolific Assam hill goat

• Published in: Molecular biology reports Vol. 41; no. 6; pp. 3677 - 3681
• Main Authors: Dutta, Rupam, Laskar, Subimal, Borah, Probodh, Kalita, Dhrubajyoti, Das, Bula, Zaman, Galib, Barman, Nagendra Nath, Saikia, Deep Prakash
• Format: Journal Article
• Language: English
• Published: Dordrecht Springer-Verlag 01.06.2014; Springer Netherlands; Springer Nature B.V
• Subjects: alleles; Animal Anatomy; Animal Biochemistry; Animal reproduction; Animals; Base Sequence; Biomedical and Life Sciences; Bone Morphogenetic Protein Receptors, Type I - genetics; bone morphogenetic proteins; Capra hircus; DNA; fecundity; Fertility - genetics; gel electrophoresis; Genotype; goat breeds; Goats; Goats - genetics; Histology; India; Life Sciences; Litter Size - genetics; Morphology; Mutation; Phylogenetics; polymerase chain reaction; Polymorphism; Polymorphism, Single Nucleotide; Proteins; Sequence Analysis, DNA; single nucleotide polymorphism; India; BMPR1B; Fecundity; Ovulation rate; Sequencing; Phylogenetic tree
• ISSN: 0301-4851; 1573-4978
• DOI: 10.1007/s11033-014-3232-4

Assam hill goat (Capra hircus) is a prolific local goat in India. bone morphogenetic protein receptor (BMPR1B) gene was studied as a candidate gene for the prolificacy of goats. The objective of the present study was to detect the incidence of mutation in the exonic region of BMPR1B gene of Assam hill goat. Total 90 blood samples were collected randomly from different parts of Assam and genomic DNA were extracted using phenol–chloroform method. The quantity and quality of extracted DNA was examined by spectrophotometry and gel electrophoresis, respectively. PCR amplicon showed a product of 140 bp fragment of BMPR1B gene. The purified product upon digestion with AvaII showed monomorphic banding pattern and revealed wild type alleles with AA genotype. Nucleotide sequencing showed one new mutation 773 (G→C) which is found to be unique in Assam hill goat. Construction of tree at nucleotide level generates from the present experiment lies in common cluster which differs from the other breeds of goat. The analysis of polymorphism for BMPR1B in Assam hill goat indicates that the genetic factor responsible for prolificacy or multiple kidding rates is not related to the reported mutated alleles of BMPR1B gene. Therefore, attempts to be made to detect other SNPs for BMPR1B gene or otherwise effort should be made towards other fecundity gene which might be responsible for the prolificacy of Assam hill goat.