Host-guest scale of left-handed polyproline II helix formation

• Published in: Proteins, structure, function, and bioinformatics Vol. 53; no. 1; pp. 68 - 75
• Main Authors: Rucker, Adam L., Pager, Cara T., Campbell, Margaret N., Qualls, Joseph E., Creamer, Trevor P.
• Format: Journal Article
• Language: English
• Published: Hoboken Wiley Subscription Services, Inc., A Wiley Company 01.10.2003
• Subjects: Amino Acid Sequence; Circular Dichroism; Hydrogen-Ion Concentration; Peptides - chemistry; proline-rich sequences; Protein Structure, Secondary; protein-protein interactions; unfolded proteins
• ISSN: 0887-3585; 1097-0134
• DOI: 10.1002/prot.10477

Despite the clear importance of the left‐handed polyproline II (PPII) helical conformation in many physiologically important processes as well as its potential significance in protein unfolded states, little is known about the physical determinants of this conformation. We present here a scale of relative PPII helix‐forming propensities measured for all residues, except tyrosine and tryptophan, in a proline‐based host peptide system. Proline has the highest measured propensity in this system, a result of strong steric interactions that occur between adjacent prolyl rings. The other measured propensities are consistent with backbone solvation being an important component in PPII helix formation. Side chain to backbone hydrogen bonding may also play a role in stabilizing this conformation. The PPII helix‐forming propensity scale will prove useful in future studies of the conformational properties of proline‐rich sequences as well as provide insights into the prevalence of PPII helices in protein unfolded states. Proteins 2003. © 2003 Wiley‐Liss, Inc.