Deep learning in single-molecule imaging and analysis: recent advances and prospects

• Published in: Chemical science (Cambridge) Vol. 13; no. 41; pp. 11964 - 1198
• Main Authors: Liu, Xiaolong, Jiang, Yifei, Cui, Yutong, Yuan, Jinghe, Fang, Xiaohong
• Format: Journal Article
• Language: English
• Published: England Royal Society of Chemistry 26.10.2022; The Royal Society of Chemistry
• Subjects: Algorithms; Chemistry; Data processing; Deep learning; Feature extraction; Human bias; Machine learning
• ISSN: 2041-6520; 2041-6539
• DOI: 10.1039/d2sc02443h

Single-molecule microscopy is advantageous in characterizing heterogeneous dynamics at the molecular level. However, there are several challenges that currently hinder the wide application of single molecule imaging in bio-chemical studies, including how to perform single-molecule measurements efficiently with minimal run-to-run variations, how to analyze weak single-molecule signals efficiently and accurately without the influence of human bias, and how to extract complete information about dynamics of interest from single-molecule data. As a new class of computer algorithms that simulate the human brain to extract data features, deep learning networks excel in task parallelism and model generalization, and are well-suited for handling nonlinear functions and extracting weak features, which provide a promising approach for single-molecule experiment automation and data processing. In this perspective, we will highlight recent advances in the application of deep learning to single-molecule studies, discuss how deep learning has been used to address the challenges in the field as well as the pitfalls of existing applications, and outline the directions for future development. Deep learning has been applied in all stages of single molecule imaging and analysis.