Hazara Nairovirus Requires COPI Components in both Arf1-Dependent and Arf1-Independent Stages of Its Replication Cycle

• Published in: Journal of virology Vol. 94; no. 17
• Main Authors: Fuller, J, Álvarez-Rodríguez, B, Todd, E J A A, Mankouri, J, Hewson, R, Barr, J N
• Format: Journal Article
• Language: English
• Published: United States American Society for Microbiology 17.08.2020
• Subjects: ADP-Ribosylation Factor 1 - genetics; ADP-Ribosylation Factor 1 - metabolism; Animals; Brefeldin A; Coat Protein Complex I - genetics; Coat Protein Complex I - metabolism; Endoplasmic Reticulum - metabolism; Gene Expression Regulation, Viral; Gene Knockdown Techniques; Golgi Apparatus - metabolism; Host-Pathogen Interactions - genetics; Host-Pathogen Interactions - physiology; Nairovirus - genetics; Nairovirus - metabolism; Nairovirus - pathogenicity; Protein Transport; RNA, Small Interfering; Spotlight; Virus Replication - genetics; Virus Replication - physiology; Virus-Cell Interactions; host factors; COPI; cell biology; virology
• ISSN: 0022-538X; 1098-5514
• DOI: 10.1128/JVI.00766-20

Hazara nairovirus (HAZV) is an enveloped trisegmented negative-strand RNA virus classified within the family of the order and a member of the same subtype as Crimean-Congo hemorrhagic fever virus, responsible for fatal human disease. Nairoviral subversion of cellular trafficking pathways to permit viral entry, gene expression, assembly, and egress is poorly understood. Here, we generated a recombinant HAZV expressing enhanced green fluorescent protein and used live-cell fluorescent imaging to screen an siRNA library targeting genes involved in cellular trafficking networks, the first such screen for a nairovirus. The screen revealed prominent roles for subunits of the coat protein 1 (COPI)-vesicle coatomer, which regulates retrograde trafficking of cargo between the Golgi apparatus and the endoplasmic reticulum, as well as intra-Golgi transport. We show the requirement of COPI-coatomer subunits impacted at least two stages of the HAZV replication cycle: an early stage prior to and including gene expression and also a later stage during assembly and egress of infectious virus, with COPI-knockdown reducing titers by approximately 1,000-fold. Treatment of HAZV-infected cells with brefeldin A (BFA), an inhibitor of Arf1 activation required for COPI coatomer formation, revealed that this late COPI-dependent stage was Arf1 dependent, consistent with the established role of Arf1 in COPI vesicle formation. In contrast, the early COPI-dependent stage was Arf1 independent, with neither BFA treatment nor siRNA-mediated ARF1 knockdown affecting HAZV gene expression. HAZV exploitation of COPI components in a noncanonical Arf1-independent process suggests that COPI coatomer components may perform roles unrelated to vesicle formation, adding further complexity to our understanding of cargo-mediated transport. Nairoviruses are tick-borne enveloped RNA viruses that include several pathogens responsible for fatal disease in humans and animals. Here, we analyzed host genes involved in trafficking networks to examine their involvement in nairovirus replication. We revealed important roles for genes that express multiple components of the COPI complex, which regulates transport of Golgi apparatus-resident cargos. COPI components influenced at least two stages of the nairovirus replication cycle: an early stage prior to and including gene expression and also a later stage during assembly of infectious virus, with COPI knockdown reducing titers by approximately 1,000-fold. Importantly, while the late stage was Arf1 dependent, as expected for canonical COPI vesicle formation, the early stage was found to be Arf1 independent, suggestive of a previously unreported function of COPI unrelated to vesicle formation. Collectively, these data improve our understanding of nairovirus host-pathogen interactions and suggest a new Arf1-independent role for components of the COPI coatomer complex.