Sixty-one thousand recent planktonic foraminifera from the Atlantic Ocean
Marine microfossils record the environmental, ecological, and evolutionary dynamics of past oceans in temporally expanded sedimentary archives. Rapid imaging approaches provide a means of exploiting the primary advantage of this archive, the vast number of fossils, for evolution and ecology. Here we...
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Published in | Scientific data Vol. 5; no. 1; p. 180109 |
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Main Authors | , , , , , |
Format | Journal Article |
Language | English |
Published |
London
Nature Publishing Group UK
28.08.2018
Nature Publishing Group |
Subjects | |
Online Access | Get full text |
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Summary: | Marine microfossils record the environmental, ecological, and evolutionary dynamics of past oceans in temporally expanded sedimentary archives. Rapid imaging approaches provide a means of exploiting the primary advantage of this archive, the vast number of fossils, for evolution and ecology. Here we provide the first large scale image and 2D and 3D shape dataset of modern planktonic foraminifera, a major microfossil group, from 34 Atlantic Ocean sediment samples. Information on more than 124,000 objects is provided, including general object classification for 4/5ths of the dataset (~ 99,000 objects). Of the ~ 99,000 classifications provided, more than 61,000 are complete or damaged planktonic foraminifera. Objects also include benthic foraminifera, ostracods, pteropods, spicules, and planktonic foraminifera test fragments, among others. This dataset is the first major microfossil output of a new high-throughput imaging method (
AutoMorph
) developed to extract 2D and 3D data from photographic images of fossils. Our sample preparation and imaging techniques are described in detail. The data provided here comprises the most extensive publically available archive of planktonic foraminiferal morphology and morphological variation to date.
Design Type(s)
image analysis objective • observation design • biodiversity assessment objective
Measurement Type(s)
two-dimensional spatial region • morphology
Technology Type(s)
imaging method • morphometry
Factor Type(s)
geographic location
Sample Characteristic(s)
Foraminifera • North Atlantic Ocean • South Atlantic Ocean • marine sediment
Machine-accessible metadata file describing the reported data
(ISA-Tab format) |
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Bibliography: | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 ObjectType-Undefined-3 P.M.H. conceived and coordinated the study. P.M.H. and L.E.E. selected the focal sites and drafted the manuscript. LEE performed all imaging and technical validations. L.E.E., A.Y.H., and S.S.K. carried out image processing, morphometric analyses, and database compilation. All objects were classified by P.M.H. and L.E.E. P.M.H. checked all data products for quality and completeness. Classification app was developed by A.Y.H., S.S.K., and P.M.H. and tested and improved by L.E.E. and L.C.S. A.Y.H., K.N., and P.M.H. developed AutoMorph software. A.Y.H., K.N., and P.M.H. optimized AutoMorph software with help from L.E.E. |
ISSN: | 2052-4463 2052-4463 |
DOI: | 10.1038/sdata.2018.109 |