Molecular diversity of katG genes in the soil bacteria Comamonas

• Published in: Archives of microbiology Vol. 192; no. 3; pp. 175 - 184
• Main Authors: Godočíková, Jana, Zámocký, Marcel, Bučková, Mária, Obinger, Christian, Polek, Bystrík
• Format: Journal Article
• Language: English
• Published: Berlin/Heidelberg Berlin/Heidelberg : Springer-Verlag 01.03.2010; Springer-Verlag; Springer; Springer Nature B.V
• Subjects: Amino Acid Sequence; Bacteria; Bacterial Proteins - chemistry; Bacterial Proteins - classification; Bacterial Proteins - genetics; Bacteriology; Biochemistry; Biological and medical sciences; Biomedical and Life Sciences; Biotechnology; Cell Biology; Cloning; Comamonas - classification; Comamonas - genetics; E coli; Ecology; Enzymes; Evolution, Molecular; Fundamental and applied biological sciences. Psychology; Genes; Genetics; Laboratories; Life Sciences; Microbial Ecology; Microbiology; Molecular Sequence Data; Original Paper; Oxidative stress; Peroxidases - chemistry; Peroxidases - classification; Peroxidases - genetics; Phylogenetics; Phylogeny; Promoter Regions, Genetic - genetics; Selection, Genetic - genetics; Sequence Homology, Amino Acid; Soil Microbiology; United States > US; Slovakia; KatG gene; Molecular diversity; Positive darwinian selection; Catalase-peroxidase; Comamonas testosteroni; Genetic variability; Enzyme; Comamonadaceae; Comamonas terrigena; Soils; Peroxidases; Catalase; Gene; Bacteria; Oxidoreductases
• ISSN: 0302-8933; 1432-072X
• DOI: 10.1007/s00203-009-0541-4

Three complete katG genes coding for bifunctional catalase-peroxidases (KatGs) from the β-proteobacterium Comamonas terrigena and two related strains of Comamonas testosteroni have been cloned and sequenced. Catalase-peroxidases are unique bifunctional enzymes known to be expressed in these soil bacteria in response to environmental and/or oxidative stress. The evolutionary and structural diversity of these enzymes is investigated based on multiple sequence alignment and comprehensive phylogenetic analysis. The reconstructed phylogenetic tree and well-known structure-function relationships were applied to inspect the conservation of essential residues. Observed diversity is discussed with respect to the fact that KatGs are distinctive gene-duplicated peroxidases comprising a N-terminal (enzymatically active) and a C-terminal (heme-less) domain. The unique promoter motifs regulating katG transcription in four strains of Comamonas were detected and compared with E. coli katG promoter. The relationship between the promoter sequences and the corresponding expression levels was analyzed. A significant difference in heat shock-inducible catalatic and peroxidatic activities between E. coli K12 and Comamonas terrigena & testosteroni strains was observed. The peculiar variability in gene-coding sequences appears to be more significant for such activity output among Comamonas strains than differences in their promoter regions. The functional role of observed increased diversity in the C-terminal domain is discussed with respect to potential modification of catalytic features at the N-terminal domain that could be relevant for these soil bacteria to cope with stressors.