Stochastic models coupling gene expression and partitioning in cell division in Escherichia coli

• Published in: BioSystems Vol. 193-194; p. 104154
• Main Authors: Baptista, Ines S.C., Ribeiro, Andre S.
• Format: Journal Article
• Language: English
• Published: Ireland Elsevier B.V 01.06.2020
• Subjects: Animals; Cell Division - physiology; Escherichia coli; Escherichia coli - physiology; Gene Expression Regulation - physiology; Genetic circuits; Humans; Models, Biological; Partitioning in cell division; Single gene expression; Stochastic models; Stochastic Processes; Genetic circuits; Single gene expression; Stochastic models; Partitioning in cell division; Escherichia coli
• ISSN: 0303-2647; 1872-8324; 1872-8324
• DOI: 10.1016/j.biosystems.2020.104154

Regulation of future RNA and protein numbers is a key process by which cells continuously best fit the environment. In bacteria, RNA and proteins exist in small numbers and their regulatory processes are stochastic. Consequently, there is cell-to-cell variability in these numbers, even between sister cells. Traditionally, the two most studied sources of this variability are gene expression and RNA and protein degradation, with evidence suggesting that the latter is subject to little regulation, when compared to the former. However, time-lapse microscopy and single molecule fluorescent tagging have produced evidence that cell division can also be a significant source of variability due to asymmetries in the partitioning of RNA and proteins. Relevantly, the impact of this noise differs from noise in production and degradation since, unlike these, it is not continuous. Rather, it occurs at specific time points, at which moment it can introduce major fluctuations. Several models have now been proposed that integrate noise from cell division, in addition to noise in gene expression, to mimic the dynamics of RNA and protein numbers of cell lineages. This is expected to be particularly relevant in genetic circuits, where significant fluctuations in one component protein, at specific time moments, are expected to perturb near-equilibrium states of the circuits, which can have long-lasting consequences. Here we review stochastic models coupling these processes in Escherichia coli, from single genes to small circuits.