GenBank

• Published in: Nucleic acids research Vol. 44; no. D1; pp. D67 - D72
• Main Authors: Clark, Karen, Karsch-Mizrachi, Ilene, Lipman, David J, Ostell, James, Sayers, Eric W
• Format: Journal Article
• Language: English
• Published: England Oxford University Press 04.01.2016
• Subjects: Database Issue; Databases, Nucleic Acid; Proteins - genetics; RNA, Ribosomal, 16S - genetics; Sequence Analysis, DNA
• ISSN: 0305-1048; 1362-4962
• DOI: 10.1093/nar/gkv1276

GenBank(®) (www.ncbi.nlm.nih.gov/genbank/) is a comprehensive database that contains publicly available nucleotide sequences for over 340 000 formally described species. Recent developments include a new starting page for submitters, a shift toward using accession.version identifiers rather than GI numbers, a wizard for submitting 16S rRNA sequences, and an Identical Protein Report to address growing issues of data redundancy. GenBank organizes the sequence data received from individual laboratories and large-scale sequencing projects into 18 divisions, and GenBank staff assign unique accession.version identifiers upon data receipt. Most submitters use the web-based BankIt or standalone Sequin programs. Daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through the nuccore, nucest, and nucgss databases of the Entrez retrieval system, which integrates these records with a variety of other data including taxonomy nodes, genomes, protein structures, and biomedical journal literature in PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP.