Ascomycota and Basidiomycota fungal phyla as indicators of land use efficiency for soil organic carbon accrual with woody plantations

• Published in: Ecological indicators Vol. 160; p. 111796
• Main Authors: Manici, Luisa M., Caputo, Francesco, Fornasier, Flavio, Paletto, Alessandro, Ceotto, Enrico, De Meo, Isabella
• Format: Journal Article
• Language: English
• Published: Elsevier Ltd 01.03.2024; Elsevier
• Subjects: Carbon sequestration; Digital PCR; Land use; Saproptrophic soil fungi; Short rotation forest; Topsoil; Topsoil; Digital PCR; Saproptrophic soil fungi; Carbon sequestration; Land use; Short rotation forest
• ISSN: 1470-160X; 1872-7034
• DOI: 10.1016/j.ecolind.2024.111796

•Afforestation increase of soil organic carbon (C) in farmland is assessed.•Total fungi and two fungal populations were quantified in term of DNA copy number.•Ascomycetes and Basidiomycetes showed different responses to land use and cover.•Total fungi and Ascomycetes were indicators of C accumulation activity.•The Ascomycota to Basidiomycota ratio was qualitative indicator of C processes. As soil fungi are major players in the carbon accumulation process, the two main fungal degraders in topsoil, Ascomycetes and Basidiomycetes, were investigated as indicators of land use effectiveness in increasing soil carbon accumulation and soil function. The study focused on the soil organic carbon content increase in a 20-year short rotation forest cycle with broadleaf woody plantations compared to a nearby arable cropping system. Total fungi, Ascomycota and Basidiomycota, were quantified in terms of DNA copy number, with specific probes using SYBR® Green I dye on the QuantStudio™ 3D digital PCR system (dPCR). Previously, next generation sequencing analysis using a general primer confirmed that Ascomycota and Basidiomycota were the most represented phyla and that fungal community composition significantly differed between treatments. A range of key soil enzyme activities for the C-cycle were also assessed. Total organic carbon content (TOC), microbial biomass in term of dsDNA and enzyme activities significantly increased in woody plantations compared to arable soil. The TOC increase differed significantly also between wood species, Salix and Robina gave the greatest increase (+30 and 20 % respectively), followed by Populus (+12), microbial biomass highly correlated with TOC showing the same trend. Total fungi, Ascomycota and Basidiomycota increased significantly in three woody plantations compared to the arable soil system. Ascomycota in the woody plantations increased two to four times (average 3144 n copies µl−1 of DNA) compared to the arable soil (1419 n copies µl−1); Basidiomycota were almost absent in arable soil (av. 94n copies µl−1) and increased five to six times in woody plantations (av. 490 n copies µl−1). Total fungi and ascomycetes correlated strongly with microbial biomass and TOC, whereas basidiomycetes did not. These findings showed that Ascomycota represent the largest portion of fungi in agricultural soils even after a 20-years short rotation forest cycle and they can be taken as indicators of carbon accumulation processes. Therefore, this study suggests that joining the Ascomycetes quantity in the topsoil to the Ascomycota:Basidiomycota ratio seems a good option when setting regional strategies for improving C accrual in farmland with the short-term afforestation.